relax SVN archive

Typo fix for r24368, the 'cones' molecule was mistyped.

Improvements to the internal structural object _get_chemical_name() method.

This now uses a translation table to convert the hetID or residue name into a description, for
example as used in the PDB HETNAM records to give a human readable description of the residue inside
the PDB file itself. The new rotor RTX and RTB residue names have been added to the table as well.

Renamed the residues of the rotor geometric object representation.

The rotor axis atoms now belong to the RTX residue and the propeller blades to the RTB residue. The
'RT' at the start represents the rotor and this will allow all the geometric objects to be better
isolated.

Refactored the frame order geometric motional representation code.

The code of the specific_analyses.frame_order.geometric.create_geometric_rep() function has been
spun out into 3 new functions: add_rotors(), add_axes(), and add_cones(). This is to better isolate
the various elements to allow for better control. Each function now adds the atoms for its
geometric representation to a separate molecule called 'axes' or 'cones'. The add_rotors() does not
create a molecule as the lib.structure.represent.rotor.rotor_pdb() function creates its own. As
part of the rafactorisation, the neg_cone flag has been eliminated.

Fixes for the cone geometric representation in the internal structural object.

The representation can now be created if the given MoleculeContainer object is empty.

Fix for the pivots created by the specific_analyses.frame_order.data.generate_pivot() function.

This is for the double rotor model where the 1st mode of motion is about the 2nd pivot, and the 2nd
mode of motion about the 1st pivot.

Created the very basic structure.com user function for calculating the centre of mass.

This is to simply allow an easy interface to the pipe_control.structure.mass.pipe_centre_of_mass()
function.

The new dispersion model profiling master script now includes links to the relax wiki.

The models are no longer presented by name but rather by the relax wiki links for each model (see
http://wiki.nmr-relax.com/Category:Relaxation_dispersion for all these links). This is to improve
the Google rank of the relax wiki, as these links may appear in a number of locations.

Critical fix for the recalculation of tau cpmg, when plotting for numerical models.

The interpolated dispersion points with tau_cpgm was calculated with frq, instead of cmpg_frq.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Created a master profiling script for comparing the speed between different dispersion models.

This is similar to the disp_profile_all.py script except it only operates on a single relax version.
The output is then simply the timings, with statistics, of the calculation time for 100 function
calls for 100 spins (either 10,000 function calls for single spins or 100 function calls for the
cluster of 100 spins).

The output of the script for the current disp_spin_speed branch code has also been added.