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The frame order geometric representation functions are no longer PDB specific.

Instead the format argument is accepted. This will allow different formats to be supported in the
future. Because of this change, all specific_analyses.frame_order.geometric.pdb_*() functions has
been renamed to create_*().

bugman 2014-06-27

changed /branches/frame_order_cleanup/specific_analyses/frame_order/geometric.py
changed /branches/frame_order_cleanup/specific_analyses/frame_order/uf.py
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