relax SVN archive

Restructured target function for ns mmq 3site to the new API structure of higher dimensional data.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

More fixes for numpy index in lib functions.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Documentation fix, where a double bracket "[[" has been copied into all lib functions.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Merged revisions 24028 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24028 | bugman | 2014-06-17 14:03:14 +0200 (Tue, 17 Jun 2014) | 6 lines

Fix for bug #22210 (https://gna.org/bugs/?22210), the failure of the 'LM63 3-site' dispersion model.

The problem is described in the bug report - the multiplication in the tanh() function is a mistake,
it must be a division.
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Merged revisions 24024 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24024 | tlinnet | 2014-06-17 12:32:34 +0200 (Tue, 17 Jun 2014) | 4 lines

Removed systemtest test_hansen_cpmg_data_to_lm63_3site.

This was a temporary implementation and has been replaced with systemtest:
Relax_disp.test_lm63_3site_synthetic
........

Merged revisions 24008-24009,24020-24021 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r24008 | tlinnet | 2014-06-17 09:18:19 +0200 (Tue, 17 Jun 2014) | 1 line

Adding last profiling information for model CR72.
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r24009 | tlinnet | 2014-06-17 09:18:24 +0200 (Tue, 17 Jun 2014) | 8 lines

Added systemtest for model LM63 3 site.

According to results folder in:
test_suite/shared_data/dispersion/Hansen/relax_results/LM63 3-site

This should pass.

But i doesnt?
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r24020 | bugman | 2014-06-17 12:07:35 +0200 (Tue, 17 Jun 2014) | 7 lines

Created an initial Relax_disp.test_lm63_3site_synthetic system test.

This should have been set up a long time ago. It uses the synthetic noise-free data in the
test_suite/shared_data/dispersion/lm63_3site directory which was created for a system test but never
converted into one. The test still needs modifications to allow it to pass.
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r24021 | bugman | 2014-06-17 12:15:31 +0200 (Tue, 17 Jun 2014) | 7 lines

Modifications for the Relax_disp.test_lm63_3site_synthetic system test.

The r2eff_values.bz2 saved state file has been updated, as it was too old to use in the test. The
test has also had a typo bug fixed and the data pipe name updated. The test now also checks all of
the optimised values.
........

Fix for bug #22210 (https://gna.org/bugs/?22210), the failure of the 'LM63 3-site' dispersion model.

The problem is described in the bug report - the multiplication in the tanh() function is a mistake,
it must be a division.

More replacing of numpy index.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Replaced index to numpy array from example [0][si][mi][oi] to [0, si, mi, oi].

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Merged revisions 24020-24021,24024 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

........
r24020 | bugman | 2014-06-17 12:07:35 +0200 (Tue, 17 Jun 2014) | 7 lines

Created an initial Relax_disp.test_lm63_3site_synthetic system test.

This should have been set up a long time ago. It uses the synthetic noise-free data in the
test_suite/shared_data/dispersion/lm63_3site directory which was created for a system test but never
converted into one. The test still needs modifications to allow it to pass.
........
r24021 | bugman | 2014-06-17 12:15:31 +0200 (Tue, 17 Jun 2014) | 7 lines

Modifications for the Relax_disp.test_lm63_3site_synthetic system test.

The r2eff_values.bz2 saved state file has been updated, as it was too old to use in the test. The
test has also had a typo bug fixed and the data pipe name updated. The test now also checks all of
the optimised values.
........
r24024 | tlinnet | 2014-06-17 12:32:34 +0200 (Tue, 17 Jun 2014) | 4 lines

Removed systemtest test_hansen_cpmg_data_to_lm63_3site.

This was a temporary implementation and has been replaced with systemtest:
Relax_disp.test_lm63_3site_synthetic
........