relax SVN archive

Large increase in precision for the CaM frame order torsionless pseudo-ellipse model test data set.

In addition, the theta_x and theta_y angles have also been swapped so that the new constraint of
0 <= theta_x <= theta_y <= pi built into the analysis is satisfied.

The higher precision is because the number structures in the distribution is now 20 million rather
than 1 million and the numpy.float128 data averaging has been used. The algorithm for finding
suitable random domain positions within the motional limits has been changed as well by extracting
the theta and phi tilt angles from the random rotation, dropping the torsion angle sigma, and
reconstructing the rotation from just the tilt angles. This increases the speed of the data
generation script by minimally 5 orders of magnitude.

Updated documentation on dimensionality of numpy array num_points.

They are in dimension [NE][NS][[NM][NO], where oi gives the number of
dispersion points at that offset.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Temporary added systemtest: test_korzhnev_2005_all_data_disp_speed_bug.

This makes a minimisation with 1 iteration, and so will give the chi2 value at the preset
parameter values.

This is chi2 value should give 162.5, but gives 74.7104.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Merged revisions 23881,23945,24008-24009 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

........
r23881 | bugman | 2014-06-12 14:47:31 +0200 (Thu, 12 Jun 2014) | 8 lines

Better handling of the control-C keyboard interrupt signal in the relax test suite.

This includes two changes. The Python 2.7 and higher unittest.installHandler() function is now
called, when present, to terminate all tests using the unittest module control-C handler. The
second change is that the keyboard interrupt signal is caught in a try-except statement, a message
printed out, and the tests terminated. This should be an improvement for all systems.
........
r23945 | bugman | 2014-06-13 17:54:50 +0200 (Fri, 13 Jun 2014) | 17 lines

Reverted r23693 as SciPy is actually still used in the frame order analyses.

The command used was:
$ svn merge -r23693:r23692 .

.....
r23693 | bugman | 2014-06-06 14:24:44 +0200 (Fri, 06 Jun 2014) | 6 lines
Changed paths:
M /trunk/docs/latex/install.tex

Removed all SciPy references in the installation chapter of the manual.

This is because SciPy is no longer used in the frame order analysis, hence it is not used for any
part of relax.
.....
........
r24008 | tlinnet | 2014-06-17 09:18:19 +0200 (Tue, 17 Jun 2014) | 1 line

Adding last profiling information for model CR72.
........
r24009 | tlinnet | 2014-06-17 09:18:24 +0200 (Tue, 17 Jun 2014) | 8 lines

Added systemtest for model LM63 3 site.

According to results folder in:
test_suite/shared_data/dispersion/Hansen/relax_results/LM63 3-site

This should pass.

But i doesnt?
........

Bug fix for model LM63 3site. The index si has to be used to extract data to lib function.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Added missing instances of cleaning the data.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Added systemtest for model LM63 3 site.

According to results folder in:
test_suite/shared_data/dispersion/Hansen/relax_results/LM63 3-site

This should pass.

But i doesnt?

Adding last profiling information for model CR72.

Changed the calculation of inner product in model ns cpmg 2site 3d.

The out argument of numpy.dot is buggy, and should not be used.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Changed the reshaping of dw and dwH, since it is not dependent on experiment.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.