relax SVN archive

bugfix for bug#5501

Compilation with -fPIC and -pedantic.

A few modifications to try to eliminate the segfault.

Creating a private branch to play with the C modules.

Changed the function order to be alphabetical.

Added elimination of Monte Carlo simulations to the sample scripts.

Updated the manual to replace the references to 'make' with 'sconstruct'. The installation and
development chapters have also being extended and a temporary installation path in the 'sconstruct'
script has been removed.

Bug fix:

In certain situations, the angle folding function which is called after model-free minimisation uses
the wrong run name. Now the function takes the run name as an argument to prevent the error.

The initial grid search of the diffusion tensor parameters in the full_analysis script has been
modified so that for the search of the ellipsoid diffusion tensor, only 6^6 rather than 11^6 grid
points are searched.

Bug fix:

Another Numeric version issue. The model m0 with no parameters which used to be handled okay by the
grid search and minimisation code was failing due to changes in Numeric. A few small changes have
been made to temporarily handle the instability.