relax SVN archive

Increased the kex speed to 1e7 in clustered unit tests cases.

This is to demonstrate where there will be no excange.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Important fix for replacing values if eta_pos > 700 is violated.

This fixes systemtest: Relax_disp.test_sod1wt_t25_to_cr72, which failed after making kex to a numpy float.

The trick is to make a numpy mask which stores the position where to replace the values.
Then replace the values just before last return.

This makes sure, that not all values are changed.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Modified unit tests, so kex is sent to target function as float instead of array.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Fix for testing of kex in lib function, when kex is just float.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Removed the multi dimensional structure of kex.

kex is not multi-dimensional, and can just be multiplied with numpy arrays.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Modified unit tests, so pA is sent to target function as float instead of array.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Fix for testing of pA in lib function, when pA is just float.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Removed the multi dimensional structure of pA.

pA is not multi-dimensional, and can just be multiplied with numpy arrays.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.

Merged revisions 23784-23785 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23784 | tlinnet | 2014-06-10 11:49:00 +0200 (Tue, 10 Jun 2014) | 7 lines

Lowered chi2 value test in system test Relax_disp.test_bug_22146_unpacking_r2a_r2b_cluster_NS_STAR.

This is due to the data produced on 32 bit machine, and tested on 64 bit machines.
The error was:
AssertionError: 2.4659455670347743e-05 != 0.0 within 7 places

The reason for this is due to truncation artifacts.
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r23785 | tlinnet | 2014-06-10 12:23:01 +0200 (Tue, 10 Jun 2014) | 5 lines

Fix for wrong path testing of Python.h.

Python.h would be in PYTHON_PREFIX/include/pythonX.Y/Python.h
and not in:
PYTHON_PREFIX/include/Python.h
........

Yet another small improvement for the profiling script.

Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion models for Clustered analysis.