relax SVN archive

Removed a PDB file from the 2nd rotor CaM frame order test data directory.

This is now present as a *.gz file, so the uncompressed file can go.

Merged revisions 23715 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23715 | tlinnet | 2014-06-06 18:11:33 +0200 (Fri, 06 Jun 2014) | 12 lines

Split systemtest Relax_disp.test_bug_22146_unpacking_r2a_r2b_cluster up in different tests.

A setup function which is:
setup_bug_22146_unpacking_r2a_r2b_cluster(self, folder=None, model_analyse=None):

And then the tests:
test_bug_22146_unpacking_r2a_r2b_cluster_B14
test_bug_22146_unpacking_r2a_r2b_cluster_CR72
test_bug_22146_unpacking_r2a_r2b_cluster_NS_3D
test_bug_22146_unpacking_r2a_r2b_cluster_NS_STAR

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
........

Split systemtest Relax_disp.test_bug_22146_unpacking_r2a_r2b_cluster up in different tests.

A setup function which is:
setup_bug_22146_unpacking_r2a_r2b_cluster(self, folder=None, model_analyse=None):

And then the tests:
test_bug_22146_unpacking_r2a_r2b_cluster_B14
test_bug_22146_unpacking_r2a_r2b_cluster_CR72
test_bug_22146_unpacking_r2a_r2b_cluster_NS_3D
test_bug_22146_unpacking_r2a_r2b_cluster_NS_STAR

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.

Removed some files from the 2nd rotor CaM frame order test data directory.

These are now present as *.gz files, so the uncompressed files can go.

Added the full optimisation results for the small angle rotor CaM frame order test data.

This is from the new frame_order.py optimisation script and the results demonstrate the stability of
the rotor model, even when the rotor is as small as 1 degree.

Merged revisions 23700-23708 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23700 | tlinnet | 2014-06-06 17:12:06 +0200 (Fri, 06 Jun 2014) | 5 lines

Implemented systemtest Relax_disp.test_bug_22146_unpacking_r2a_r2b_cluster.

This is to catch the wrong un-packing of R2A and R2B when performing a clustered full dispersion model analysis.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
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r23701 | tlinnet | 2014-06-06 17:12:13 +0200 (Fri, 06 Jun 2014) | 3 lines

Fix for the wrong unpacking of R20A and R20B in model CR72 full.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models
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r23702 | tlinnet | 2014-06-06 17:26:26 +0200 (Fri, 06 Jun 2014) | 5 lines

Extended systemtest Relax_disp.test_bug_22146_unpacking_r2a_r2b_cluster for B14 full model.

This is to catch the wrong un-packing of R2A and R2B when performing a clustered full dispersion model analysis.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
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r23703 | tlinnet | 2014-06-06 17:26:28 +0200 (Fri, 06 Jun 2014) | 3 lines

Fix for the wrong unpacking of R20A and R20B in model B14 full.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
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r23704 | tlinnet | 2014-06-06 17:26:36 +0200 (Fri, 06 Jun 2014) | 5 lines

Extended systemtest Relax_disp.test_bug_22146_unpacking_r2a_r2b_cluster for NS CPMG 2SITE 3D full model.

This is to catch the wrong un-packing of R2A and R2B when performing a clustered full dispersion model analysis.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
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r23705 | tlinnet | 2014-06-06 17:26:37 +0200 (Fri, 06 Jun 2014) | 3 lines

Fix for the wrong unpacking of R20A and R20B in model NS CPMG 2SITE 3D full model.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
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r23706 | tlinnet | 2014-06-06 17:37:48 +0200 (Fri, 06 Jun 2014) | 5 lines

Extended systemtest Relax_disp.test_bug_22146_unpacking_r2a_r2b_cluster for NS CPMG 2SITE STAR full model.

This is to catch the wrong un-packing of R2A and R2B when performing a clustered full dispersion model analysis.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
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r23707 | tlinnet | 2014-06-06 17:37:50 +0200 (Fri, 06 Jun 2014) | 3 lines

Fix for the wrong unpacking of R20A and R20B in model NS CPMG 2SITE STAR full model.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
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r23708 | tlinnet | 2014-06-06 17:37:52 +0200 (Fri, 06 Jun 2014) | 3 lines

Added synthetic data generator script, which created the data to test against.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.
........

Merged revisions 23694-23695 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23694 | bugman | 2014-06-06 14:26:05 +0200 (Fri, 06 Jun 2014) | 5 lines

Fix for the wxPython link in the installation chapter of the manual.

This was pointing to the scipy website for some reason.
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r23695 | bugman | 2014-06-06 14:28:58 +0200 (Fri, 06 Jun 2014) | 5 lines

Changed the Python readline link for MS Windows in the installation chapter of the manual.

This now points to https://pypi.python.org/pypi/pyreadline as the iPython link is broken.
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Merged revisions 23693 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23693 | bugman | 2014-06-06 14:24:44 +0200 (Fri, 06 Jun 2014) | 6 lines

Removed all SciPy references in the installation chapter of the manual.

This is because SciPy is no longer used in the frame order analysis, hence it is not used for any
part of relax.
........

Added the full optimisation results for the 2nd rotor frame order model for the CaM test data.

This is from the new frame_order.py optimisation script and the results demonstrate the stability of
the rotor model.

Added synthetic data generator script, which created the data to test against.

bug #22146: (https://gna.org/bugs/?22146) Unpacking of R2A and R2B is performed wrong for clustered "full" dispersion models.