relax SVN archive

Removed the 8th unit test for model NS CPMG 2site 3D.

This was the catching of errors when kex=1e20.

The model cannot handle this situations, and we need to let it fail.

Removed nested looping of returning back_calc in lib/ns_cpmg_2site_3d.

Merged revisions 23488,23490-23493,23495-23500 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

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r23488 | bugman | 2014-05-28 08:59:22 +0200 (Wed, 28 May 2014) | 5 lines

Modified the frame order constraints so that cone_theta_x <= cone_theta_y.

The linear_constraints() function docstring has been updated to include this constraint.
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r23490 | tlinnet | 2014-05-28 10:25:14 +0200 (Wed, 28 May 2014) | 1 line

Set dim=4 when setting chi surface level in user function dx.map.
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r23491 | bugman | 2014-05-28 10:31:49 +0200 (Wed, 28 May 2014) | 5 lines

Fix for the n_state_model.cone_pdb user function for the recent internal structural object changes.

The cone arguments should now be called cone_obj.
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r23492 | bugman | 2014-05-28 10:39:21 +0200 (Wed, 28 May 2014) | 7 lines

Fix for the frame_order.pdb_model user function for the rotor models.

The rotor axis is no longer defined by spherical angles and therefore needs to be recreated using
the create_rotor_axis_alpha() rather than create_rotor_axis_spherical() function from
lib.frame_order.rotor_axis.
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r23493 | bugman | 2014-05-28 11:05:16 +0200 (Wed, 28 May 2014) | 5 lines

Renamed the relax_disp.set_grid_r20_from_min_r2eff user function to relax_disp.r20_from_min_r2eff.

This follows from the proposal at http://thread.gmane.org/gmane.science.nmr.relax.devel/5957.
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r23495 | bugman | 2014-05-28 11:19:56 +0200 (Wed, 28 May 2014) | 7 lines

Modification to the Sequence_2D GUI element used for some user function windows.

The selection_win_show() method has been redefined, as the parent method from the Sequence element
is specific for the 1D sequence module. The open_dialog() method has also been modified to use the
new selection_win_show(), as well as the parent Sequence class selection_win_data() method.
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r23496 | bugman | 2014-05-28 11:26:48 +0200 (Wed, 28 May 2014) | 6 lines

Created the User_functions.test_structure_rotate GUI tests.

This is to catch bug #22100 (https://gna.org/bugs/?22100), the rotation argument for the
structure.rotate user function cannot be changed in the GUI, as an AttributeError is raised.
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r23497 | tlinnet | 2014-05-28 11:28:30 +0200 (Wed, 28 May 2014) | 1 line

Moved py_type "list_val_or_list_of_list_val" to 2D sequence types.
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r23498 | tlinnet | 2014-05-28 11:28:32 +0200 (Wed, 28 May 2014) | 1 line

Added dim dimensions to match the x,y,z positions for GUI input in user function dx.map.
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r23499 | bugman | 2014-05-28 11:29:57 +0200 (Wed, 28 May 2014) | 3 lines

Modified the User_functions.test_structure_rotate GUI test to change and check the rotation matrix.
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r23500 | bugman | 2014-05-28 11:31:19 +0200 (Wed, 28 May 2014) | 3 lines

Fixes for some big mistakes in the previous commit.
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Fixes for some big mistakes in the previous commit.

Modified the User_functions.test_structure_rotate GUI test to change and check the rotation matrix.

Added dim dimensions to match the x,y,z positions for GUI input in user function dx.map.

Moved py_type "list_val_or_list_of_list_val" to 2D sequence types.

Created the User_functions.test_structure_rotate GUI tests.

This is to catch bug #22100 (https://gna.org/bugs/?22100), the rotation argument for the
structure.rotate user function cannot be changed in the GUI, as an AttributeError is raised.

Modification to the Sequence_2D GUI element used for some user function windows.

The selection_win_show() method has been redefined, as the parent method from the Sequence element
is specific for the 1D sequence module. The open_dialog() method has also been modified to use the
new selection_win_show(), as well as the parent Sequence class selection_win_data() method.

Merged revisions 23490-23493 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23490 | tlinnet | 2014-05-28 10:25:14 +0200 (Wed, 28 May 2014) | 1 line

Set dim=4 when setting chi surface level in user function dx.map.
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r23491 | bugman | 2014-05-28 10:31:49 +0200 (Wed, 28 May 2014) | 5 lines

Fix for the n_state_model.cone_pdb user function for the recent internal structural object changes.

The cone arguments should now be called cone_obj.
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r23492 | bugman | 2014-05-28 10:39:21 +0200 (Wed, 28 May 2014) | 7 lines

Fix for the frame_order.pdb_model user function for the rotor models.

The rotor axis is no longer defined by spherical angles and therefore needs to be recreated using
the create_rotor_axis_alpha() rather than create_rotor_axis_spherical() function from
lib.frame_order.rotor_axis.
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r23493 | bugman | 2014-05-28 11:05:16 +0200 (Wed, 28 May 2014) | 5 lines

Renamed the relax_disp.set_grid_r20_from_min_r2eff user function to relax_disp.r20_from_min_r2eff.

This follows from the proposal at http://thread.gmane.org/gmane.science.nmr.relax.devel/5957.
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