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Merged revisions 23370,23373-23374,23379,23389,23392,23408 via svnmerge from

svn+ssh://tlinnet@.../svn/relax/trunk

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r23370 | bugman | 2014-05-23 10:18:37 +0200 (Fri, 23 May 2014) | 7 lines

Fix for the Relax_disp.test_cpmg_synthetic_dx_map_points system test.

This uses the default parameter values to start the optimisation, therefore the recent change away
from edge case 'no Rex' values allows the parameter values stored in ds.dx_clust_val to be correctly
optimised.
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r23373 | bugman | 2014-05-23 11:25:34 +0200 (Fri, 23 May 2014) | 7 lines

Speed up for the version module when using a repository copy of the code.

The repository revision and URL and now stored as module variables, so that the 'svn info' and
'git svn info' commands are only run twice, once for the revision() function and once for the url()
function.
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r23374 | bugman | 2014-05-23 12:11:36 +0200 (Fri, 23 May 2014) | 15 lines

Large speed up for the relax start up times for svn and git-svn copies of the relax repository.

The 'svn info' and 'git svn info' commands are now only executed once when the version module is
first imported. The revision() and url() functions have been merged into the repo_info() function
and this is called when the module is imported. This repo_info() function stores the repository
revision and URL as the version.repo_revision and version.repo_url module variables. It also
catches if these variables are already set, so that multiple imports of the module do not cause the
repository information to be looked up each time.

Previously the revision() and url() functions where called every time a relax state or result file
was created, hence for repository copies the 'svn info' or 'git svn info' commands were being called
each time. The functions were also called for each interpreter object instantiated, and for each
import of the version module.
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r23379 | bugman | 2014-05-23 14:45:43 +0200 (Fri, 23 May 2014) | 6 lines

Backported the relax 3.2.1 CHANGES file changes to trunk.

The command used was:
svn merge -r23376:23377 svn+ssh://bugman@.../svn/relax/tags/3.2.1 .
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r23389 | bugman | 2014-05-23 19:39:53 +0200 (Fri, 23 May 2014) | 6 lines

Small speed up for all the isotropic cone and pseudo-elliptic cone frame order models.

The vector length calculation for the numeric PCS integration has been simplified and shifted
outside of a loop to take advantage of the speed of numpy.
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r23392 | bugman | 2014-05-24 08:53:35 +0200 (Sat, 24 May 2014) | 3 lines

All three file arguments for the pymol.frame_order user function are now optional.
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r23408 | bugman | 2014-05-26 09:52:52 +0200 (Mon, 26 May 2014) | 6 lines

Updated all the API documentation links in the dispersion chapter of the manual.

These were pointing to http://www.nmr-relax.com/api/3.1/ whereas they should now be point to
http://www.nmr-relax.com/api/3.2/.
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tlinnet 2014-05-26

changed /branches/disp_speed
changed /branches/disp_speed/data_store/__init__.py
changed /branches/disp_speed/docs/CHANGES
changed /branches/disp_speed/docs/latex/dispersion.tex
changed /branches/disp_speed/info.py
changed /branches/disp_speed/lib/frame_order/matrix_ops.py
changed /branches/disp_speed/pipe_control/pymol_control.py
changed /branches/disp_speed/test_suite/system_tests/frame_order.py
changed /branches/disp_speed/test_suite/system_tests/relax_disp.py
changed /branches/disp_speed/user_functions/pymol_control.py
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