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Merged revisions 23336-23337,23340,23343,23345,23352,23360,23362 via svnmerge from

svn+ssh://tlinnet@.../svn/relax/trunk

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r23336 | bugman | 2014-05-22 15:39:21 +0200 (Thu, 22 May 2014) | 6 lines

Created the Structure.test_bug_22070_structure_superimpose_after_deletion system test.

This is to catch bug #22070 (https://gna.org/bugs/index.php?22070), the failure of the
structure.superimpose user function after deleting atoms with structure.delete.
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r23337 | bugman | 2014-05-22 16:09:50 +0200 (Thu, 22 May 2014) | 6 lines

Added some checks to the Structure.test_bug_22070_structure_superimpose_after_deletion system test.

These tests reveal the real problem - that the atoms of the second model have not been removed by
the structure.delete user function.
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r23340 | bugman | 2014-05-22 17:21:05 +0200 (Thu, 22 May 2014) | 11 lines

Important bug fix for the structure.delete user function when multiple models are present.

This is to fix bug #22070 (https://gna.org/bugs/index.php?22070), the failure of the
structure.superimpose user function after deleting atoms with structure.delete.

The problem is that structure.delete was removing the atoms from the first model but none of the
others. This is because it was using the structural object atom_loop() method to find the atoms to
be deleted, but this method operates on the first model. So when the second model is reached, the
atoms are already gone.
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r23343 | bugman | 2014-05-22 18:10:32 +0200 (Thu, 22 May 2014) | 4 lines

Added git-svn support for the relax version information module.

This allows the subversion revision number and repository URL to be displayed on program startup, so
that it is stored in log files. This is very useful for debugging purposes.
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r23345 | bugman | 2014-05-22 18:18:27 +0200 (Thu, 22 May 2014) | 3 lines

Improvements for the git-svn support in the relax version module.

Python 3 is now correctly handled and the URL is properly extracted from the git repository.
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r23352 | bugman | 2014-05-22 18:31:35 +0200 (Thu, 22 May 2014) | 3 lines

Removed a debugging printout.
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r23360 | bugman | 2014-05-22 19:39:22 +0200 (Thu, 22 May 2014) | 6 lines

Improvement for the unit test printouts when run with the --time command line option.

The full unit test name is now printed out, reverting to the old behaviour (prior to r21965).
However the shortened test names are preserved for the other test suite categories.
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r23362 | bugman | 2014-05-22 19:55:47 +0200 (Thu, 22 May 2014) | 9 lines

Created the test_ns_cpmg_2site_expanded_no_rex8() relaxation dispersion unit test.

This is a demonstration commit, showing the 'NS CPMG 2-site expanded' model with no exchange when
kex = 1e5. I.e. when the motion is too fast for exchange to be observed. This test should be used
for all dispersion models to make sure that they model this edge case correctly as well.

This follows from http://article.gmane.org/gmane.science.nmr.relax.devel/5906.
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tlinnet 2014-05-22

changed /branches/disp_speed
changed /branches/disp_speed/lib/structure/internal/object.py
changed /branches/disp_speed/test_suite/relax_test_runner.py
changed /branches/disp_speed/test_suite/system_tests/structure.py
changed /branches/disp_speed/test_suite/test_suite_runner.py
changed /branches/disp_speed/test_suite/unit_tests/_lib/_dispersion/test_ns_cpmg_2site_expanded.py
changed /branches/disp_speed/version.py
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