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Updated the CaM frame order test model superimposition script.

The Ca2+ atoms are now deleted from the structures before superimposition so that the centroid
matches that used in the frame order analysis.

bugman 2014-05-22

changed /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/superimpose.log
changed /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/superimpose.py
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