relax SVN archive

Improvements for the git-svn support in the relax version module.

Python 3 is now correctly handled and the URL is properly extracted from the git repository.

Merged revisions 23343 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23343 | bugman | 2014-05-22 18:10:32 +0200 (Thu, 22 May 2014) | 4 lines

Added git-svn support for the relax version information module.

This allows the subversion revision number and repository URL to be displayed on program startup, so
that it is stored in log files. This is very useful for debugging purposes.
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Added git-svn support for the relax version information module.

This allows the subversion revision number and repository URL to be displayed on program startup, so
that it is stored in log files. This is very useful for debugging purposes.

Unit test _lib/test_ns_cpmg_2site_expanded.py copied to _/test_lm63.py.

They are both of CPMG type.

Merged revisions 23340 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23340 | bugman | 2014-05-22 17:21:05 +0200 (Thu, 22 May 2014) | 11 lines

Important bug fix for the structure.delete user function when multiple models are present.

This is to fix bug #22070 (https://gna.org/bugs/index.php?22070), the failure of the
structure.superimpose user function after deleting atoms with structure.delete.

The problem is that structure.delete was removing the atoms from the first model but none of the
others. This is because it was using the structural object atom_loop() method to find the atoms to
be deleted, but this method operates on the first model. So when the second model is reached, the
atoms are already gone.
........

Important bug fix for the structure.delete user function when multiple models are present.

This is to fix bug #22070 (https://gna.org/bugs/index.php?22070), the failure of the
structure.superimpose user function after deleting atoms with structure.delete.

The problem is that structure.delete was removing the atoms from the first model but none of the
others. This is because it was using the structural object atom_loop() method to find the atoms to
be deleted, but this method operates on the first model. So when the second model is reached, the
atoms are already gone.

Merged revisions 23336-23337 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r23336 | bugman | 2014-05-22 15:39:21 +0200 (Thu, 22 May 2014) | 6 lines

Created the Structure.test_bug_22070_structure_superimpose_after_deletion system test.

This is to catch bug #22070 (https://gna.org/bugs/index.php?22070), the failure of the
structure.superimpose user function after deleting atoms with structure.delete.
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r23337 | bugman | 2014-05-22 16:09:50 +0200 (Thu, 22 May 2014) | 6 lines

Added some checks to the Structure.test_bug_22070_structure_superimpose_after_deletion system test.

These tests reveal the real problem - that the atoms of the second model have not been removed by
the structure.delete user function.
........

Added 7 unit tests demonstrating edge case 'no Rex' failures of the model 'DPL94'.

This follows from the ideas in the post http://article.gmane.org/gmane.science.nmr.relax.devel/5858.
This is related to: task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.

This is to implement catching of math domain errors, before they occur.

These tests cover all parameter value combinations which result in no exchange:

- dw = 0.0,
- pA = 1.0,
- kex = 0.0,
- dw = 0.0 and pA = 1.0,
- dw = 0.0 and kex = 0.0,
- pA = 1.0 and kex = 0.0,
- dw = 0.0, pA = 1.0, and kex = 0.0.

Added some checks to the Structure.test_bug_22070_structure_superimpose_after_deletion system test.

These tests reveal the real problem - that the atoms of the second model have not been removed by
the structure.delete user function.

Created the Structure.test_bug_22070_structure_superimpose_after_deletion system test.

This is to catch bug #22070 (https://gna.org/bugs/index.php?22070), the failure of the
structure.superimpose user function after deleting atoms with structure.delete.