relax SVN archive

Merged revisions 23327-23329,23331 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r23327 | bugman | 2014-05-22 14:05:01 +0200 (Thu, 22 May 2014) | 17 lines

Added 7 unit tests demonstrating edge case 'no Rex' failures of the 'NS CPMG 2-site expanded' model.

This follows from the ideas in the post http://article.gmane.org/gmane.science.nmr.relax.devel/5858.

These tests cover all parameter value combinations which result in no exchange:

- dw = 0.0,
- pA = 1.0,
- kex = 0.0,
- dw = 0.0 and pA = 1.0,
- dw = 0.0 and kex = 0.0,
- pA = 1.0 and kex = 0.0,
- dw = 0.0, pA = 1.0, and kex = 0.0.

Such tests should be replicated for all dispersion models.
........
r23328 | bugman | 2014-05-22 14:30:58 +0200 (Thu, 22 May 2014) | 6 lines

Created the Structure.test_bug_22069_structure_delete_helix_attribute system test.

This is to catch bug #22069 (https://gna.org/bugs/index.php?22069), the failure of the
structure.delete user function with "AttributeError: Internal instance has no attribute 'helices'".
........
r23329 | bugman | 2014-05-22 14:37:09 +0200 (Thu, 22 May 2014) | 6 lines

Fix for bug #22069 by only deleting helix and sheet data with structure.delete when it exists.

This is bug #22069 (https://gna.org/bugs/index.php?22069), the failure of the structure.delete user
function with "AttributeError: Internal instance has no attribute 'helices'".
........
r23331 | bugman | 2014-05-22 14:52:08 +0200 (Thu, 22 May 2014) | 10 lines

Fix for all edge case 'no Rex' failures of the 'NS CPMG 2-site expanded' model.

This uses the no exchange checking idea, modified to function in the relax trunk, from
http://article.gmane.org/gmane.science.nmr.relax.devel/5847. This is importantly on line 1 of the
function.

The recently introduced set of 7 unit tests (r23327) comprehensively showing these failures now all
pass. This commit is mainly for demonstration purposes.
........

Modified unit tests demonstrating edge case 'no Rex' failures of the model 'NS CPMG 2-site expanded'.

This is to align with the current return of data in the disp_speed branch.

This follows from the ideas in the post http://article.gmane.org/gmane.science.nmr.relax.devel/5858.
This is related to: task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.

This is to implement catching of math domain errors, before they occur.

These tests cover all parameter value combinations which result in no exchange:

- dw = 0.0,
- pA = 1.0,
- kex = 0.0,
- dw = 0.0 and pA = 1.0,
- dw = 0.0 and kex = 0.0,
- pA = 1.0 and kex = 0.0,
- dw = 0.0, pA = 1.0, and kex = 0.0.

Align math-domain catching for model NS CPMG 2-site expanded with trunk implementation.

task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.

This is to implement catching of math domain errors, before they occur.

The catching of errors have to be more careful.

Merged revisions 23331 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

........
r23331 | bugman | 2014-05-22 14:52:08 +0200 (Thu, 22 May 2014) | 10 lines

Fix for all edge case 'no Rex' failures of the 'NS CPMG 2-site expanded' model.

This uses the no exchange checking idea, modified to function in the relax trunk, from
http://article.gmane.org/gmane.science.nmr.relax.devel/5847. This is importantly on line 1 of the
function.

The recently introduced set of 7 unit tests (r23327) comprehensively showing these failures now all
pass. This commit is mainly for demonstration purposes.
........

Fix for all edge case 'no Rex' failures of the 'NS CPMG 2-site expanded' model.

This uses the no exchange checking idea, modified to function in the relax trunk, from
http://article.gmane.org/gmane.science.nmr.relax.devel/5847. This is importantly on line 1 of the
function.

The recently introduced set of 7 unit tests (r23327) comprehensively showing these failures now all
pass. This commit is mainly for demonstration purposes.

Merged revisions 23327-23329 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

........
r23327 | bugman | 2014-05-22 14:05:01 +0200 (Thu, 22 May 2014) | 17 lines

Added 7 unit tests demonstrating edge case 'no Rex' failures of the 'NS CPMG 2-site expanded' model.

This follows from the ideas in the post http://article.gmane.org/gmane.science.nmr.relax.devel/5858.

These tests cover all parameter value combinations which result in no exchange:

- dw = 0.0,
- pA = 1.0,
- kex = 0.0,
- dw = 0.0 and pA = 1.0,
- dw = 0.0 and kex = 0.0,
- pA = 1.0 and kex = 0.0,
- dw = 0.0, pA = 1.0, and kex = 0.0.

Such tests should be replicated for all dispersion models.
........
r23328 | bugman | 2014-05-22 14:30:58 +0200 (Thu, 22 May 2014) | 6 lines

Created the Structure.test_bug_22069_structure_delete_helix_attribute system test.

This is to catch bug #22069 (https://gna.org/bugs/index.php?22069), the failure of the
structure.delete user function with "AttributeError: Internal instance has no attribute 'helices'".
........
r23329 | bugman | 2014-05-22 14:37:09 +0200 (Thu, 22 May 2014) | 6 lines

Fix for bug #22069 by only deleting helix and sheet data with structure.delete when it exists.

This is bug #22069 (https://gna.org/bugs/index.php?22069), the failure of the structure.delete user
function with "AttributeError: Internal instance has no attribute 'helices'".
........

Fix for bug #22069 by only deleting helix and sheet data with structure.delete when it exists.

This is bug #22069 (https://gna.org/bugs/index.php?22069), the failure of the structure.delete user
function with "AttributeError: Internal instance has no attribute 'helices'".

Created the Structure.test_bug_22069_structure_delete_helix_attribute system test.

This is to catch bug #22069 (https://gna.org/bugs/index.php?22069), the failure of the
structure.delete user function with "AttributeError: Internal instance has no attribute 'helices'".

Added 7 unit tests demonstrating edge case 'no Rex' failures of the 'NS CPMG 2-site expanded' model.

This follows from the ideas in the post http://article.gmane.org/gmane.science.nmr.relax.devel/5858.

These tests cover all parameter value combinations which result in no exchange:

- dw = 0.0,
- pA = 1.0,
- kex = 0.0,
- dw = 0.0 and pA = 1.0,
- dw = 0.0 and kex = 0.0,
- pA = 1.0 and kex = 0.0,
- dw = 0.0, pA = 1.0, and kex = 0.0.

Such tests should be replicated for all dispersion models.

Parameter update for the 2nd rotor CaM frame order test model optimisation script.

The Euler angles for the rotation about the motional pivot have been replaced by the translation
vector and Euler angle CoM rotation parameters.