relax SVN archive

Python >= 3.2 fix for the Relax_disp.test_sod1wt_t25_to_sherekhan_input system test.

The B0 field value of the ShereKhan input files created by the relax_disp.sherekhan_input user
function was formatted as "%s". However in Python >= 3.2, floats are now converted to have 14
decimal places whereas previous Python versions only had 10 places. The user function backend now
forces only 10 decimal places to be written to the input files.

Python 3 fixes for all of the relax code base.

The command used was:
2to3 -j 4 -w \
-f buffer \
-f idioms \
-f set_literal \
-f ws_comma \
-x except \
-x import \
-x imports \
-x long \
-x numliterals \
-x xrange \
.

The lib.compat and multi.processor module changes were fatal, not useful for Python 3, and hence
reverted.

Python 3 fixes for the extern.numpy_future module.

These changes are necessary to allow relax to even run.

Merged revisions 23254,23260 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

........
r23254 | bugman | 2014-05-20 13:37:32 +0200 (Tue, 20 May 2014) | 12 lines

Fix for the chain-reaction failures in the test suite.

This fixes bug #22055 (https://gna.org/bugs/?22055), the processor.run_queue() not cleaning up in
uni_processor - chain-reaction failures in the test suite.

The fix was insanely simple, just implementing what was mentioned Gary's FIXME comment in the
run_queue() method of the uni-processor object. The queue execution code has been placed inside a
'try' statement and the queue cleaning up code in a 'finally' statement.

This closes a painfully difficult to find bug that has been in relax since 2006.
........
r23260 | bugman | 2014-05-20 16:19:30 +0200 (Tue, 20 May 2014) | 6 lines

Converted the Mf.test_opendx_s2_te_rex system test into a GUI test.

This is to demonstrate bug #22035 (https://gna.org/bugs/?22035), the dx.map user function being
broken in the GUI.
........

Converted the Mf.test_opendx_s2_te_rex system test into a GUI test.

This is to demonstrate bug #22035 (https://gna.org/bugs/?22035), the dx.map user function being
broken in the GUI.

Reverted r23250-23248 as the correct fix was done in fixing bug 22055.

bug #22055 (https://gna.org/bugs/?22055) The processor.run_queue() does not clean up in uni_processor - chain-reaction failures in the test suite.

The command used was:
svn merge -r23250:r23247 .

.....
r23250 | tlinnet | 2014-05-20 02:02:19 +0200 (Tue, 20 May 2014) | 1 line

Fix for variable num_points not set.
------------------------------------------------------------------------
r23249 | tlinnet | 2014-05-20 01:47:37 +0200 (Tue, 20 May 2014) | 4 lines

An attempt to fix the pipe_control/minimisy.py minimise() call to processor.run_queue().

It was thought that I was modifying the address of array class(back_calc).
But this does not seem to be the problem.
------------------------------------------------------------------------
r23248 | tlinnet | 2014-05-20 01:47:34 +0200 (Tue, 20 May 2014) | 11 lines

Turned of processor.run_queue() when using calc().

task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.

A weird behaviour was found when running the test-suite.

Somehow, queued jobs from the last test suite was not flushed and done.
Running the test-suite gave errors on almost all tests.

Inspecting systemtest which only used calc() for the dispersion API, showed that no jobs was queued
in the calculate() method, and the call to processor.run_queue(), was turned off, solving the problem.
.....

Large increase in accuracy of the RDC and PCS averaging.

This is for the CaM frame order test data generation base script. By summing the RDCs and PCSs into
1D numpy.float128 arrays (for this, a 64-bit system is required), and then dividing by N at the end,
the average value can be calculated with a much higher accuracy. As N becomes larger, the
numerical averaging introduces greater and greater amounts of truncation artifacts. So this change
alleviates this.

This change is what r23252 should have been.

Improvements to the progress meter for the CaM frame order test data generation base script.

Commas are now printed between the thousands and the numbers are now right justified.

Reverted r23252 as this uses far, far too much RAM, and there is a better solution.

The command used was:
svn merge -r23252:r23251 .

.....
r23252 | bugman | 2014-05-20 11:48:11 +0200 (Tue, 20 May 2014) | 7 lines
Changed paths:
M /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/generate_base.py

Large increase in accuracy of the RDC and PCS averaging.

This is for the CaM frame order test data generation base script. By storing the RDCs and PCSs in
numpy.float128 arrays, a 64-bit system is required, and then using numpy.average(), the average
value can be calculated with a much higher accuracy. As N becomes larger, the averaging introduces
greater and greater amounts of truncation artifacts. So this change alleviates this. However a lot
more RAM is now required.
.....

Merged revisions 23254 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r23254 | bugman | 2014-05-20 13:37:32 +0200 (Tue, 20 May 2014) | 12 lines

Fix for the chain-reaction failures in the test suite.

This fixes bug #22055 (https://gna.org/bugs/?22055), the processor.run_queue() not cleaning up in
uni_processor - chain-reaction failures in the test suite.

The fix was insanely simple, just implementing what was mentioned Gary's FIXME comment in the
run_queue() method of the uni-processor object. The queue execution code has been placed inside a
'try' statement and the queue cleaning up code in a 'finally' statement.

This closes a painfully difficult to find bug that has been in relax since 2006.
........