relax SVN archive

Math-domain catching for model B14.

task #7793: (https://gna.org/task/?7793) Speed-up of dispersion models.

This is to implement catching of math domain errors, before they occur.
These can be found via the --numpy-raise function to the systemtests.

To make the code look clean, the class object "back_calc" is no longer
being updated per time point, but is updated in the relax_disp target function in
one go.

Merged revisions 23230,23232,23234-23236 via svnmerge from
svn+ssh://tlinnet@.../svn/relax/trunk

........
r23230 | bugman | 2014-05-19 11:57:56 +0200 (Mon, 19 May 2014) | 7 lines

Exposed the backend verbosity flag of the structure.read_* user functions.

This allows the user to silence these user functions, which can be very useful when loading many
3D structures in the scripting UI mode. This change is for the structure.read_gaussian,
structure.read_pdb, and structure.read_xyz user functions.
........
r23232 | bugman | 2014-05-19 12:09:17 +0200 (Mon, 19 May 2014) | 7 lines

Expanded the structure.delete user function to add the 'verbosity' and 'spin_info' arguments.

The verbosity argument, when set to zero, allows all output to be suppressed. The spin_info flag
allows the deletion of spin and interatomic data to now be turned off, so that only 3D data is
deleted.
........
r23234 | bugman | 2014-05-19 12:21:31 +0200 (Mon, 19 May 2014) | 5 lines

The new structure.delete 'verbosity' argument is now propagated into the structural object.

This allows the printouts to now be completely suppressed.
........
r23235 | bugman | 2014-05-19 12:25:49 +0200 (Mon, 19 May 2014) | 5 lines

The structure.read_* user function 'verbosity' argument is now passed into the structural object.

This allows another printout to be silenced.
........
r23236 | bugman | 2014-05-19 12:29:36 +0200 (Mon, 19 May 2014) | 5 lines

The structure.read_* user function 'verbosity' argument is now passed into lib.io.open_read_file().

This allows all printouts from these three user functions to be suppressed.
........

Merged revisions 23234-23236 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r23234 | bugman | 2014-05-19 12:21:31 +0200 (Mon, 19 May 2014) | 5 lines

The new structure.delete 'verbosity' argument is now propagated into the structural object.

This allows the printouts to now be completely suppressed.
........
r23235 | bugman | 2014-05-19 12:25:49 +0200 (Mon, 19 May 2014) | 5 lines

The structure.read_* user function 'verbosity' argument is now passed into the structural object.

This allows another printout to be silenced.
........
r23236 | bugman | 2014-05-19 12:29:36 +0200 (Mon, 19 May 2014) | 5 lines

The structure.read_* user function 'verbosity' argument is now passed into lib.io.open_read_file().

This allows all printouts from these three user functions to be suppressed.
........

The structure.read_* user function 'verbosity' argument is now passed into lib.io.open_read_file().

This allows all printouts from these three user functions to be suppressed.

The structure.read_* user function 'verbosity' argument is now passed into the structural object.

This allows another printout to be silenced.

The new structure.delete 'verbosity' argument is now propagated into the structural object.

This allows the printouts to now be completely suppressed.

Merged revisions 23232 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r23232 | bugman | 2014-05-19 12:09:17 +0200 (Mon, 19 May 2014) | 7 lines

Expanded the structure.delete user function to add the 'verbosity' and 'spin_info' arguments.

The verbosity argument, when set to zero, allows all output to be suppressed. The spin_info flag
allows the deletion of spin and interatomic data to now be turned off, so that only 3D data is
deleted.
........

Expanded the structure.delete user function to add the 'verbosity' and 'spin_info' arguments.

The verbosity argument, when set to zero, allows all output to be suppressed. The spin_info flag
allows the deletion of spin and interatomic data to now be turned off, so that only 3D data is
deleted.

Merged revisions 23230 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r23230 | bugman | 2014-05-19 11:57:56 +0200 (Mon, 19 May 2014) | 7 lines

Exposed the backend verbosity flag of the structure.read_* user functions.

This allows the user to silence these user functions, which can be very useful when loading many
3D structures in the scripting UI mode. This change is for the structure.read_gaussian,
structure.read_pdb, and structure.read_xyz user functions.
........

Exposed the backend verbosity flag of the structure.read_* user functions.

This allows the user to silence these user functions, which can be very useful when loading many
3D structures in the scripting UI mode. This change is for the structure.read_gaussian,
structure.read_pdb, and structure.read_xyz user functions.