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[r23167] by bugman

Improvements for the 2D Grace plots created by the rdc.corr_plot user function.

The autoscaling is now turned off, as the data set representing the diagonal (with points
[-100, -100] and [100, 100]) causes the world view to be set to be between -100 to 100 or -200 to
200.

The world view is set to be between -50 and 50 Hz, so that all RDCs should be visible. The ticks in
the plot have also been set so that the minor ticks are at every Hz increment.

2014-05-14 09:13:39 Tree
[r23166] by bugman

Advances to the Grace 2D plotting abilities in the lib.software.grace relax library module.

The write_xy_header() function now accepts the new 'world', 'tick_major_spacing', and
'tick_minor_count' arguments. These allow the world view to be preset, and allow the ticks on the
X and Y-axes to be programatically changed. The write_xy_data() has also been modified so that the
autoscaling can be turned off, as this Grace command will overwrite the world view and tick setup.

2014-05-14 09:09:37 Tree
[r23165] by bugman

Exampled the stereochemistry analysis section of the N-state model chapter of the manual.

2014-05-14 06:48:46 Tree
[r23164] by bugman

Editing of the auto_analyses.stereochem_analysis module docstring.

The line wrapping to 100 characters has been removed.

2014-05-14 06:47:58 Tree
[r23163] by bugman

Added a new section for the stereochemistry analysis to the N-state model chapter of the manual.

This is just an initial introduction and an inclusion of the sample script.

2014-05-13 22:36:39 Tree
[r23162] by bugman

Replaced 'Q-factor' with 'Q factor' throughout the relax codebase.

This change to the correct notation covers code, comments, and docstrings.

2014-05-13 21:41:56 Tree
[r23161] by bugman

Docstring improvements for the stereochem_analysis.py N-state model sample script.

The paragraphs are now all on one line and 'Q-factor' has been changed to 'Q factor'.

2014-05-13 21:19:44 Tree
[r23160] by bugman

Spacing improvements in the stereochem_analysis.py N-state mode sample script.

2014-05-13 21:16:04 Tree
[r23159] by bugman

Started to create a chapter for the N-state model or ensemble analysis in the manual.

This simply consists of a few introductory sections and the phathalic acid graphic.

2014-05-13 21:09:09 Tree
[r23158] by bugman

Fixed the description of the N-state model in the pipe.create user function.

This has nothing to do with domain motions - it is the treatment of ensembles of structures.

2014-05-13 19:56:37 Tree
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