relax SVN archive

Added 4 unit tests for the lib.geometry.lines.closest_point_ax() function.

This relax library function was previously not being checked in the test suite.

Updated synthetic CPMG data script.

This is to analyse complex dispersion data.

Related to problem:
bug #22021:(https://gna.org/bugs/?22021) Model B14 shows bad fitting to data.
bug #22024:(https://gna.org/bugs/?22024) Minimisation space for CR72 is catastrophic. The chi2 surface over dw and pA is bounded.

Created branch for the testing of speeding up dispersion analysis.

This can be a disruptive process, and needs its own branch.
This branch can then be tested for speed against trunk.

task #7793:(https://gna.org/task/?7793) Speed-up of dispersion models.

Moved numpy_future from lib to extern.

Extern is special package for external software or code that is bundled with relax.

task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi surface values.

Added "numpy_future" to the __init__.py file in lib directory.

task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi surface values.

Added lib/numpy_future.py.

This module is for implementing numpy function code from higher versions of numpy.

The relax dependencies listed at the download page of relax:
http://www.nmr-relax.com/download.html#Source_code_release
currently only requires Numpy v. 1.0.4.

task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi surface values.

Changed the percentage which is different in percentile from numpy_future.

task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi surface values.

Changed the import of percentile from lib.mathematics to lib.numpy_future.

task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi surface values.

Fix for systemtest Relax_dips.test_cpmg_synthetic_dx_map_points.

Removing keyword "remap", since this is not in use anymore.

task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi surface values.

Reverted r23140 as this violated the license of http://code.activestate.com.

The recipe, was a function to compute the percentile of range of values.
This is because that numpy.percentile is first introduced in 1.6?

The recipe was from:
http://code.activestate.com/recipes/511478-finding-the-percentile-of-the-values/.

The command used was:
svn merge -r23140:23139 .

.....
Added mathematics functions to lib/mathematics.py to calculate percentile.

This is because percentile is only available in numpy 1.9.

task #7792: (https://gna.org/task/?7792) Make the dx.map write suggest chi surface values.

Modified:
trunk/lib/mathematics.py
.....