relax SVN archive

Changed manual, to the recipe at Appendix 1.

This was changed after the wish of the author.

Discussed in: http://thread.gmane.org/gmane.science.nmr.relax.devel/5632.

sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14 model - 2-site exact solution model for all time scales.

This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#The_relax_manual

Made better notation of equation.

sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14 model - 2-site exact solution model for all time scales.

This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#The_relax_manual

Better latex2html support for the relax manual.

The hyperlink command \href{}{} and inline bibliographic reference command \bibentry{} are now
supported in the HTML version of the relax manual. These are translated into
\htmladdnormallink{#2}{#1} and \citet{#1} command respectively, both of which are supported by
latex2html. This will significantly improve the documentation at
http://www.nmr-relax.com/manual/index.html.

Apostrophe fix in the LaTeX bibliography file.

This will fix my name at http://www.nmr-relax.com/manual/Bibliography.html so that it is not
displayed as d’Auvergne.

The \bibitem command is no longer ignored when building the HTML version of the relax manual.

This will allow the bibliography at http://www.nmr-relax.com/manual/Bibliography.html to be
formatted in a reasonable way. And citations will have proper links to the entries in this file
rather than the current behaviour of linking to itself, hence not going anywhere.

Fixes for all URLs in the HTML version of the relax manual.

This fix will appear later at http://www.nmr-relax.com/manual/index.html once the next version of
relax is released. The trick was to translate the \url{} LaTeX commands which are not recognised by
latex2html into \htmladdnormallink{#1}{#1} commands using a htmlonly environment in the headers.

Used LaTeX subequations instead, and using R2eff parameter is defined in the relax.tex

Using the defined \Rtwoeff, \RtwozeroA, \RtwozeroB, \kAB, \kBA, \kex.

sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14 model - 2-site exact solution model for all time scales.

This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#The_relax_manual

Removed the pre-calculation of "zeta2 = zeta**2" "Psi2 = Psi**2" since it did not speed-up things.

This power 2 of zeta and Psi is only done once.

sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14 model - 2-site exact solution model for all time scales.

This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#Debugging

Re-inserted the library function of b14.py the calculation of:

deltaR2 = r20a - r20b
alpha_m = deltaR2 + k_AB - k_BA
zeta = 2 * dw * alpha_m
Psi = alpha_m**2 + 4 * k_BA * k_AB - dw**2

And put the g_fact = 1/sqrt(2), inside the library function.

It made no sense to put these calculations outside the library, since there would be no skipping of a loop.

It actually makes much better sense to keep these calculation in the library function, to preserve the possibility
to import this module in other software.

sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14 model - 2-site exact solution model for all time scales.

This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#Debugging

Updated the references in the b14.py library file, to point to the wiki, and the future API and html documentation.

The link to API and html documentation is to be updated for the future compilation of these.

sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14 model - 2-site exact solution model for all time scales.

This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#The_relax_manual