relax SVN archive

Shifted the frame order average domain position info check from the 'optimisation' to 'checks' module.

Fix for the optimised chi-squared value check in the Frame_order.test_cam_rotor system test.

The reduced parameter set results in a slightly different chi2 value.

Reverted r22192 as the parameter conversion is now performed by the base script.

This is only for the rotor CaM frame order system test script. The changes to the base script have
already been rewritten.

The command used was:
svn merge -r22192:22191 test_suite/system_tests/scripts/frame_order/cam/rotor.py

Renamed the specific_analyses.frame_order.user_functions module to uf.

This is to match the changes in trunk.

Merged revisions 22611 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r22611 | bugman | 2014-03-29 00:15:18 +0100 (Sat, 29 Mar 2014) | 7 lines

Fix for the new singleton design of the specific analysis API objects.

The use of the class namespace as a storage space has been eliminated. This was causing test suite
failures when checking the API objects. For some reason, some of the target function objects were
being placed in 'self'.
........

Import fix.

Fix for the new singleton design of the specific analysis API objects.

The use of the class namespace as a storage space has been eliminated. This was causing test suite
failures when checking the API objects. For some reason, some of the target function objects were
being placed in 'self'.

Merged revisions 22608-22609 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r22608 | bugman | 2014-03-28 22:01:56 +0100 (Fri, 28 Mar 2014) | 6 lines

Fixes for the specific analysis API unit tests.

The 'instance' variable used for the singleton design pattern is skipped in the method and object
checks.
........
r22609 | bugman | 2014-03-28 22:03:42 +0100 (Fri, 28 Mar 2014) | 9 lines

Redesign of the specific analysis API.

All parts of relax using this API now work with the API objects directly. The
specific_analyses.setup module has been renamed to specific_analyses.api and the get_specific_fn()
function has been eliminated. Instead of calling this, the different parts of relax now obtain the
API object by calling the new return_api() function. This results in a large cleanup of the API -
method names are no longer changed to a different name.
........

Redesign of the specific analysis API.

All parts of relax using this API now work with the API objects directly. The
specific_analyses.setup module has been renamed to specific_analyses.api and the get_specific_fn()
function has been eliminated. Instead of calling this, the different parts of relax now obtain the
API object by calling the new return_api() function. This results in a large cleanup of the API -
method names are no longer changed to a different name.

Fixes for the specific analysis API unit tests.

The 'instance' variable used for the singleton design pattern is skipped in the method and object
checks.