relax SVN archive

Merged revisions 22584-22604 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22584 | bugman | 2014-03-28 12:17:42 +0100 (Fri, 28 Mar 2014) | 3 lines

Shifted the model-free analysis specific API object to the specific_analyses.model_free.api module.
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r22585 | bugman | 2014-03-28 12:24:58 +0100 (Fri, 28 Mar 2014) | 3 lines

Fixes for the new specific_analyses.model_free.api module.
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r22586 | bugman | 2014-03-28 14:34:03 +0100 (Fri, 28 Mar 2014) | 6 lines

Created the new specific_analyses.model_free.uf module.

This consists of the private methods from the 'main' module which act as the back end for the user
functions as well as the user function documentation.
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r22587 | bugman | 2014-03-28 14:56:48 +0100 (Fri, 28 Mar 2014) | 6 lines

Created the new specific_analyses.model_free.parameters module.

This consists of the private methods from the 'main' and 'mf_minimise'. All class methods have been
converted into functions.
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r22588 | bugman | 2014-03-28 16:05:19 +0100 (Fri, 28 Mar 2014) | 6 lines

Created the new specific_analyses.model_free.optimisation module.

This consists of the merger of the 'mf_minimise' and 'multi_processor_commands' modules. All the
private class methods have been converted into functions.
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r22589 | bugman | 2014-03-28 16:56:05 +0100 (Fri, 28 Mar 2014) | 3 lines

Shifted all of the model-free specific analysis API methods into specific_analyses.model_free.api.
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r22590 | bugman | 2014-03-28 16:56:59 +0100 (Fri, 28 Mar 2014) | 3 lines

Removal of some unused imports from specific_analyses.model_free.api.
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r22591 | bugman | 2014-03-28 17:04:41 +0100 (Fri, 28 Mar 2014) | 6 lines

Clean up and refactoring of the specific_analyses.model_free.bmrb module.

The class methods have all been converted into functions, the deleted class is no longer a base
class for the specific analysis API class.
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r22592 | bugman | 2014-03-28 17:08:41 +0100 (Fri, 28 Mar 2014) | 6 lines

The read_columnar_results() method has been removed from the specific analysis API.

This is only for backwards compatibility with ancient relax 1.2 and earlier model-free results
files, so will never be used by any other analysis.
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r22593 | bugman | 2014-03-28 17:15:36 +0100 (Fri, 28 Mar 2014) | 3 lines

Updated the model-free specific analysis package __all__ list for the recent changes.
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r22594 | bugman | 2014-03-28 17:18:40 +0100 (Fri, 28 Mar 2014) | 5 lines

Converted all of the class methods in specific_analyses.model_free.results to functions.

This class has been removed from the API as well.
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r22595 | bugman | 2014-03-28 17:23:24 +0100 (Fri, 28 Mar 2014) | 5 lines

Renamed specific_analyses.model_free.results to back_compat.

This is to make the purpose of the module clearer, to avoid developer confusion.
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r22596 | bugman | 2014-03-28 18:00:00 +0100 (Fri, 28 Mar 2014) | 3 lines

Shifted the model-free classic_style_doc user function documentation to the 'uf' module.
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r22597 | bugman | 2014-03-28 18:09:10 +0100 (Fri, 28 Mar 2014) | 5 lines

Shifted the last private method out of the model-free specific analysis API class.

It has been converted into a function of the new 'data' module, for lack of a better name.
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r22598 | bugman | 2014-03-28 18:19:43 +0100 (Fri, 28 Mar 2014) | 3 lines

Shifted some of the specific_analyses.model_free.parameters functions into the new 'model' module.
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r22599 | bugman | 2014-03-28 18:30:36 +0100 (Fri, 28 Mar 2014) | 6 lines

Removed the test_grid_ops() method from the specific analysis API.

This has been shifted into the new lib.optimisation module and converted into a function, breaking
a number of circular import kludges.
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r22600 | bugman | 2014-03-28 18:38:59 +0100 (Fri, 28 Mar 2014) | 3 lines

Import fixes for BMRB reading and writing support in the model-free analysis.
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r22601 | bugman | 2014-03-28 18:40:54 +0100 (Fri, 28 Mar 2014) | 3 lines

Dasha support fix for the changes to the model-free specific analysis package.
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r22602 | bugman | 2014-03-28 18:41:33 +0100 (Fri, 28 Mar 2014) | 3 lines

Modelfree4 support fix for the changes to the model-free specific analysis package.
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r22603 | bugman | 2014-03-28 18:45:30 +0100 (Fri, 28 Mar 2014) | 3 lines

Updated the lib package __all__ list.
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r22604 | bugman | 2014-03-28 18:48:31 +0100 (Fri, 28 Mar 2014) | 3 lines

Alphabetical ordering of functions in the model-free specific analysis package modules.
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Alphabetical ordering of functions in the model-free specific analysis package modules.

Updated the lib package __all__ list.

Modelfree4 support fix for the changes to the model-free specific analysis package.

Dasha support fix for the changes to the model-free specific analysis package.

Import fixes for BMRB reading and writing support in the model-free analysis.

Removed the test_grid_ops() method from the specific analysis API.

This has been shifted into the new lib.optimisation module and converted into a function, breaking
a number of circular import kludges.

Shifted some of the specific_analyses.model_free.parameters functions into the new 'model' module.

Shifted the last private method out of the model-free specific analysis API class.

It has been converted into a function of the new 'data' module, for lack of a better name.

Shifted the model-free classic_style_doc user function documentation to the 'uf' module.