relax SVN archive

Merged revisions 22575-22582 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22575 | bugman | 2014-03-28 10:16:53 +0100 (Fri, 28 Mar 2014) | 9 lines

The specific analysis API classes are now all singletons.

This change will reduce the amount of memory used, as these classes are initialised multiple times
throughout relax, especially in the test suite. The API objects are not used for local storage so
the multiple instance verses singleton design change will make no difference. The singleton design
pattern code has been added to the base class specific_analyses.api_base.Api_base so that all
classes inherit the __new__() method which implements the singleton.
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r22576 | bugman | 2014-03-28 10:26:23 +0100 (Fri, 28 Mar 2014) | 3 lines

Shifted the NOE analysis specific user function documentation from the API object to the uf module.
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r22577 | bugman | 2014-03-28 10:56:07 +0100 (Fri, 28 Mar 2014) | 6 lines

More code refactorisation of the specific_analyses.n_state_model package into new modules.

The API object is now in the 'api' module, the remaining private methods have been shifted into the
'optimisation' and 'uf' modules, and the user function documentation moved to the 'uf' module.
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r22578 | bugman | 2014-03-28 11:04:09 +0100 (Fri, 28 Mar 2014) | 3 lines

Added units tests for package consistency testing for all of the remaining specific analyses.
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r22579 | bugman | 2014-03-28 11:04:57 +0100 (Fri, 28 Mar 2014) | 3 lines

Fixes for the unit tests for the N-state model specific analysis package changes.
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r22580 | bugman | 2014-03-28 11:09:43 +0100 (Fri, 28 Mar 2014) | 3 lines

Updated the package __all__ lists for a number of the specific analyses.
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r22581 | bugman | 2014-03-28 11:29:57 +0100 (Fri, 28 Mar 2014) | 5 lines

Shifted all of the private methods for optimisation from the relaxation dispersion API object.

These are now functions of the specific_analyses.relax_disp.optimisation module.
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r22582 | bugman | 2014-03-28 11:52:15 +0100 (Fri, 28 Mar 2014) | 7 lines

Created the new specific_analyses.relax_disp.uf module.

This consists of the private methods of the relaxation dispersion API object which act as the back
end for the user functions, as well as the user function documentation, all shifted from the 'api'
module.
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Created the new specific_analyses.relax_disp.uf module.

This consists of the private methods of the relaxation dispersion API object which act as the back
end for the user functions, as well as the user function documentation, all shifted from the 'api'
module.

Shifted all of the private methods for optimisation from the relaxation dispersion API object.

These are now functions of the specific_analyses.relax_disp.optimisation module.

Updated the package __all__ lists for a number of the specific analyses.

Fixes for the unit tests for the N-state model specific analysis package changes.

Added units tests for package consistency testing for all of the remaining specific analyses.

More code refactorisation of the specific_analyses.n_state_model package into new modules.

The API object is now in the 'api' module, the remaining private methods have been shifted into the
'optimisation' and 'uf' modules, and the user function documentation moved to the 'uf' module.

Shifted the NOE analysis specific user function documentation from the API object to the uf module.

The specific analysis API classes are now all singletons.

This change will reduce the amount of memory used, as these classes are initialised multiple times
throughout relax, especially in the test suite. The API objects are not used for local storage so
the multiple instance verses singleton design change will make no difference. The singleton design
pattern code has been added to the base class specific_analyses.api_base.Api_base so that all
classes inherit the __new__() method which implements the singleton.

Merged revisions 22568-22573 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22568 | bugman | 2014-03-27 17:31:03 +0100 (Thu, 27 Mar 2014) | 5 lines

Redesign and major clean up of the specific_analyses.jw_mapping package.

The code has been broken up into separate modules.
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r22569 | bugman | 2014-03-27 17:48:15 +0100 (Thu, 27 Mar 2014) | 5 lines

Fix for the default value table documentation in the specific_analyses.jw_mapping package.

This was broken in the last commit.
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r22570 | bugman | 2014-03-27 19:21:40 +0100 (Thu, 27 Mar 2014) | 3 lines

Updates for the rest of relax for the redesign of the specific_analyses.jw_mapping package.
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r22571 | bugman | 2014-03-27 20:27:21 +0100 (Thu, 27 Mar 2014) | 6 lines

Redesign and major clean up of the specific_analyses.consistency_tests package.

The code has been broken up into separate modules. This matches the similar
specific_analyses.jw_mapping package.
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r22572 | bugman | 2014-03-28 09:25:56 +0100 (Fri, 28 Mar 2014) | 6 lines

Redesign and major clean up of the specific_analyses.relax_fit package.

The code has been broken up into separate modules. The rest of relax has been updated to handle the
changes.
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r22573 | bugman | 2014-03-28 09:30:32 +0100 (Fri, 28 Mar 2014) | 6 lines

Removed the empty documentation strings from the specific analysis API base class.

These are being gradually shifted into the specific_analyses.*.uf modules, so do not belong in the
API object.
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