relax SVN archive

Python 3 fixes for the info module.

The new processor_name() function was not compatible with Python 3 as the text read from STDOUT
needs to be 'decoded'.

Modified the python_multiversion_test_suite.py script to run the relax information printout.

This is to test out the info module on multiple Python versions and to have a record of the setup of
each Python version.

Added matplotlib to the info module.

This follows step 1 from the planning document at
http://thread.gmane.org/gmane.science.nmr.relax.devel/5278.

Added matplotlib detection to the dep_check module.

This follows step 1 from the planning document at
http://thread.gmane.org/gmane.science.nmr.relax.devel/5278.

Merged revisions 22556 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22556 | bugman | 2014-03-26 23:00:04 +0100 (Wed, 26 Mar 2014) | 5 lines

The legends in Grace plots are now turned on by default, if the legend flags are not specified.

The Noe.test_noe_analysis system test has been updated for the change.
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The legends in Grace plots are now turned on by default, if the legend flags are not specified.

The Noe.test_noe_analysis system test has been updated for the change.

Merged revisions 22553-22554 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22553 | bugman | 2014-03-26 22:28:12 +0100 (Wed, 26 Mar 2014) | 17 lines

Redesign and standardisation of the peak intensity data structure throughout all analyses in relax.

The various structures 'intensities', 'intensity_err', 'intensity_sim', 'sim_intensity', and
'intensity_bc' have all been renamed. The new structures are called 'peak_intensity',
'peak_intensity_err', 'peak_intensity_sim' and 'peak_intensity_bc'. This allows the structure to be
processed as a standard parameter in the specific analysis API. One very visible consequence is
that plots of peak intensities, as well as value files, will now have peak intensity errors.

For backwards compatibility, the relax data store method _back_compat_hook() has been modified to
catch all previous peak intensity object variants and to standardise and rename these to the new
object names.

As the parameter is now called 'peak_intensity' rather than 'intensities', all calls to the
grace.write and value.write for this parameter have been changed in the auto-analyses, the sample
scripts, the test suite and the manual.
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r22554 | bugman | 2014-03-26 22:32:53 +0100 (Wed, 26 Mar 2014) | 5 lines

Fix for the Noe.test_noe_analysis system test.

The grace plots of the peak intensities now have error bars.
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Fix for the Noe.test_noe_analysis system test.

The grace plots of the peak intensities now have error bars.

Redesign and standardisation of the peak intensity data structure throughout all analyses in relax.

The various structures 'intensities', 'intensity_err', 'intensity_sim', 'sim_intensity', and
'intensity_bc' have all been renamed. The new structures are called 'peak_intensity',
'peak_intensity_err', 'peak_intensity_sim' and 'peak_intensity_bc'. This allows the structure to be
processed as a standard parameter in the specific analysis API. One very visible consequence is
that plots of peak intensities, as well as value files, will now have peak intensity errors.

For backwards compatibility, the relax data store method _back_compat_hook() has been modified to
catch all previous peak intensity object variants and to standardise and rename these to the new
object names.

As the parameter is now called 'peak_intensity' rather than 'intensities', all calls to the
grace.write and value.write for this parameter have been changed in the auto-analyses, the sample
scripts, the test suite and the manual.

Merged revisions 22550 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22550 | bugman | 2014-03-26 19:28:47 +0100 (Wed, 26 Mar 2014) | 10 lines

Changed the Noe auto-analysis to properly handle the peak intensity Grace plots.

This relates to bug #21863 (https://gna.org/bugs/?21863), the grace.write user function not being
able to write ref/sat plots as described in sample script noe.py.

Instead of trying to produce the 'ref.agr' and 'sat.agr' files for the non-existent 'ref' and 'sat'
parameters, instead the 'intensities.agr' file is being produced for the peak intensity parameter.
The reference and saturated intensities will appear as two graph sets within that plot.
........