relax SVN archive

Fix for the Noe.test_bug_21562_noe_replicate_fail system test.

The 'ref' and 'sat' parameters do not exist. Therefore the grace.write user function calls in the
system test script have been modified to output the 'intensities' parameter instead.

Added a simple shell script to quickly grep the entire source tree while excluding .svn directories.

This will only work on POSIX systems (Linux and Macs).

Fix for the line numbering for the NOE analysis sample script in the user manual.

The line numbering for the code snippets did not match that of the full sample script shown at the
start of that section of the NOE chapter.

Merged revisions 22543-22544 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r22543 | bugman | 2014-03-26 18:32:15 +0100 (Wed, 26 Mar 2014) | 10 lines

Changed the Noe.test_noe_analysis system test to handle the peak intensities correctly.

This relates to bug #21863 (https://gna.org/bugs/?21863), , the grace.write user function not being
able to write ref/sat plots as described in sample script noe.py.

Instead of trying to produce the 'ref.agr' and 'sat.agr' files for the non-existent 'ref' and 'sat'
parameters, instead the 'intensities.agr' file is being produced for the peak intensity parameter.
The reference and saturated intensities will appear as two graph sets within that plot.
........
r22544 | bugman | 2014-03-26 18:38:41 +0100 (Wed, 26 Mar 2014) | 11 lines

Changed the Noe analysis sample script to properly handle the peak intensity Grace plots.

This relates to bug #21863 (https://gna.org/bugs/?21863), the grace.write user function not being
able to write ref/sat plots as described in sample script noe.py.

Instead of trying to produce the 'ref.agr' and 'sat.agr' files for the non-existent 'ref' and 'sat'
parameters, instead the 'intensities.agr' file is being produced for the peak intensity parameter.
The reference and saturated intensities will appear as two graph sets within that plot. These
changes match those of the test suite.
........

Changed the Noe analysis sample script to properly handle the peak intensity Grace plots.

This relates to bug #21863 (https://gna.org/bugs/?21863), the grace.write user function not being
able to write ref/sat plots as described in sample script noe.py.

Instead of trying to produce the 'ref.agr' and 'sat.agr' files for the non-existent 'ref' and 'sat'
parameters, instead the 'intensities.agr' file is being produced for the peak intensity parameter.
The reference and saturated intensities will appear as two graph sets within that plot. These
changes match those of the test suite.

Changed the Noe.test_noe_analysis system test to handle the peak intensities correctly.

This relates to bug #21863 (https://gna.org/bugs/?21863), , the grace.write user function not being
able to write ref/sat plots as described in sample script noe.py.

Instead of trying to produce the 'ref.agr' and 'sat.agr' files for the non-existent 'ref' and 'sat'
parameters, instead the 'intensities.agr' file is being produced for the peak intensity parameter.
The reference and saturated intensities will appear as two graph sets within that plot.

Merged revisions 22541 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r22541 | bugman | 2014-03-26 18:20:40 +0100 (Wed, 26 Mar 2014) | 10 lines

Fix for the NOE analysis for the peak intensity parameters.

This relates to bug #21863 (https://gna.org/bugs/?21863), the grace.write user function not being
able to write ref/sat plots as described in sample script noe.py.

The 'ref' and 'sat' parameters have been replaced by the 'intensities' dictionary data structure a
long, long time ago. Therefore they have been eliminated and replaced by the 'intensities'
definition.
........

Fix for the NOE analysis for the peak intensity parameters.

This relates to bug #21863 (https://gna.org/bugs/?21863), the grace.write user function not being
able to write ref/sat plots as described in sample script noe.py.

The 'ref' and 'sat' parameters have been replaced by the 'intensities' dictionary data structure a
long, long time ago. Therefore they have been eliminated and replaced by the 'intensities'
definition.

Merged revisions 22539 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r22539 | bugman | 2014-03-26 17:59:15 +0100 (Wed, 26 Mar 2014) | 7 lines

Improved the user feedback when executing a user function in the GUI.

The busy cursor is now turned on at the start of the user function wizard page method _apply() and
turned off again at the end. This would avoid user confusion, thinking that the program has frozen
(as was the case in bug #21862, https://gna.org/bugs/?21862).
........

Improved the user feedback when executing a user function in the GUI.

The busy cursor is now turned on at the start of the user function wizard page method _apply() and
turned off again at the end. This would avoid user confusion, thinking that the program has frozen
(as was the case in bug #21862, https://gna.org/bugs/?21862).