This is the PDB reading failure when the PDB records are not padded to 80 spaces. The fix is
simple, all PDB records are pre-validated. This includes removing all newline characters and
padding each PDB record to 80 spaces when needed. This will however add an overhead cost -- the
internal PDB reader will now be slower. However corrupted PDB files, produced by MODELLER for
example, not padded to 80 spaces will now be better supported.
