relax SVN archive

Fixes for the Grace kex plot for the tutorial for dispersion GUI analysis.

The values for the Grace plot were not correct.

Added unit test for count_relax_times() for and R1rho setup.

Regarding bug #21344, (https://gna.org/bugs/index.php?21344) - Handling of in sparse acquired R1rho dataset with missing combinations of time and spin-lock field strengths.

Renamed previous disp_data unit tests, to reflect they were from a CPMG setup.

Regarding bug #21344, (https://gna.org/bugs/index.php?21344) - Handling of in sparse acquired R1rho dataset with missing combinations of time and spin-lock field strengths.

Added system test for bug 21344.

Regarding bug #21344, (https://gna.org/bugs/index.php?21344) - Handling of in sparse acquired R1rho dataset with missing combinations of time and spin-lock field strengths.

This test will fail with:
No intensity data could be found corresponding to the spectrometer frequency of 799.7773991 MHz, dispersion point of 431.0 and relaxation time of 0.14 s.
Data for a dispersion point of 431.0 and time 0.14 does not exist, and so some of the looping in collecting data for calculation must be wrong.
This behaviour and probably its solution is related to bug 21665, "Running a CPMG analysis with two fields at two delay times" (https://gna.org/bugs/index.php?21665).

More incorrect value fixes for the dispersion GUI tutorial in the manual.

The pA and kex values were also somehow incorrect.

Fixes for some incorrectly reported results in the dispersion GUI tutorial in the manual.

The non-clustered results had been incorrectly copied from the log messages.

Some edits for the tutorial on using the dispersion GUI analysis.

The results of the relax_disp.insignificance user function are now shown to demonstrate what this
does.

Completed the tutorial for using the dispersion analysis in the GUI.

This is for the relaxation dispersion chapter of the manual.

Merged revisions 22301-22315 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22301 | tlinnet | 2014-02-25 15:04:49 +0100 (Tue, 25 Feb 2014) | 9 lines

Added exp_type, frq, offset, point to the loop_time() function.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

Implemented as suggested in: http://www.mail-archive.com/relax-devel@.../msg04993.html
In all these cases, that information is available, so it should be used.
If one are analysing a combination of data types simultaneously (SQ CPMG, DQ CPMG, R1rho), one will not
have the same relaxation time for each. For different spin-lock or 180 degree pulse offsets and even different dispersion points,
the time may also be different.
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r22302 | tlinnet | 2014-02-25 15:04:51 +0100 (Tue, 25 Feb 2014) | 6 lines

Made count_relax_times() take optional arguments as: exp_type, frq, offset, point.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

This is prepare for re-stricting the looping over time points in the function: loop_time()
This is implemented as suggested in: http://www.mail-archive.com/relax-devel@.../msg04993.html
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r22303 | tlinnet | 2014-02-25 15:04:53 +0100 (Tue, 25 Feb 2014) | 3 lines

Modified to pass exp_typ, frq, offset or point to loop_time() where such information is available.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22304 | tlinnet | 2014-02-25 15:04:55 +0100 (Tue, 25 Feb 2014) | 5 lines

Added unit test for count_relax_times.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

This follows the suggestion in: http://www.mail-archive.com/relax-devel@.../msg04993.html.
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r22305 | tlinnet | 2014-02-25 15:04:56 +0100 (Tue, 25 Feb 2014) | 3 lines

Added test for return of get_curve_type(), to match 'fixed time'.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22306 | tlinnet | 2014-02-25 15:04:58 +0100 (Tue, 25 Feb 2014) | 3 lines

Added check for return of has_exponential_exp_type to be False.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22307 | tlinnet | 2014-02-25 15:04:59 +0100 (Tue, 25 Feb 2014) | 3 lines

Added test for the return of get_times().

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22308 | tlinnet | 2014-02-25 15:05:03 +0100 (Tue, 25 Feb 2014) | 3 lines

Re-ordered unit tests for test of get_curve_type() and has_exponential_exp_type().

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22309 | tlinnet | 2014-02-25 15:05:04 +0100 (Tue, 25 Feb 2014) | 3 lines

Added the extraction of exp_type and frq from cdp, to be sent into count_relax_times.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22310 | tlinnet | 2014-02-25 15:05:06 +0100 (Tue, 25 Feb 2014) | 3 lines

Modified check_exp_type_fixed_time to loop over id's and use count_relax_times for each id.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22311 | bugman | 2014-02-25 15:42:27 +0100 (Tue, 25 Feb 2014) | 6 lines

The fetch_docstrings.py script now creates a new LaTeX listing language for relax log messages.

This is in the script_definitions() method which creates the script_definition.tex file. The idea
is to avoid colouring relax/Python keywords such as 'as', 'from', etc. in the log messages.
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r22312 | tlinnet | 2014-02-25 16:39:32 +0100 (Tue, 25 Feb 2014) | 3 lines

Moved the unit test get_times() to its own test.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22313 | tlinnet | 2014-02-25 16:39:33 +0100 (Tue, 25 Feb 2014) | 3 lines

Moved the unit test of has_exponential_exp_type() to its own test.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22314 | tlinnet | 2014-02-25 16:39:35 +0100 (Tue, 25 Feb 2014) | 3 lines

Moved the unit test get_curve_type() to its own test.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22315 | tlinnet | 2014-02-25 16:58:36 +0100 (Tue, 25 Feb 2014) | 3 lines

Added save state for bug 21344.

Regarding bug #21344, (https://gna.org/bugs/index.php?21344) - Handling of in sparse acquired R1rho dataset with missing combinations of time and spin-lock field strengths.
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Added save state for bug 21344.

Regarding bug #21344, (https://gna.org/bugs/index.php?21344) - Handling of in sparse acquired R1rho dataset with missing combinations of time and spin-lock field strengths.