relax SVN archive

Modified the spectrum.read_intensities user function frontend to load multiple files.

This follows from the thread http://thread.gmane.org/gmane.science.nmr.relax.devel/5057/focus=5062.

Improved unit test for cathing both time and dispersion point when looping over experiment and time points.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

Added the time point to be sent into the return function of cpmg frequencies.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

Switched the looping over time points and dispersion points.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

Added test for skipping non-matching time points.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

Added the The relaxation time period to be used when returning cpmg frqs.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.

Expanded the relaxation dispersion GUI tutorial in the manual.

This now includes the first steps for loading the peak intensity data.

Merged revisions 22196-22217 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r22196 | bugman | 2014-02-17 17:59:18 +0100 (Mon, 17 Feb 2014) | 3 lines

Updated the copyright statement shown in the GUI for 2014.
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r22197 | tlinnet | 2014-02-18 12:05:54 +0100 (Tue, 18 Feb 2014) | 3 lines

Save state added for bug #21665.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22198 | tlinnet | 2014-02-18 12:19:41 +0100 (Tue, 18 Feb 2014) | 3 lines

Added systemtest to catch bug: relax -s Relax_disp.test_bug_21665_cpmg_two_fields_two_delaytimes_fail

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22199 | tlinnet | 2014-02-18 15:26:45 +0100 (Tue, 18 Feb 2014) | 3 lines

Added a systemtest for using both calc() and a systemtest for relax_disp auto analysis.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22200 | bugman | 2014-02-18 18:55:33 +0100 (Tue, 18 Feb 2014) | 6 lines

Added some initial screenshots of the dispersion GUI analysis.

These will be used to create a tutorial for using the relaxation dispersion analysis in the GUI to
be added to the dispersion chapter of the relax manual.
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r22201 | bugman | 2014-02-18 19:07:44 +0100 (Tue, 18 Feb 2014) | 6 lines

Started to create the tutorial in the manual for using the dispersion GUI.

This is at the end of the relaxation dispersion chapter of the manual and covers the basic setup of
spin systems. It includes the recently added screenshots.
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r22202 | bugman | 2014-02-19 10:15:16 +0100 (Wed, 19 Feb 2014) | 6 lines

Improvement to the formatting of the GUI menu item text in the manual.

The text can now have a line break between the items, just after the arrows. This significantly
improves the paragraph layout in the manual.
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r22203 | bugman | 2014-02-19 10:37:18 +0100 (Wed, 19 Feb 2014) | 7 lines

Created two new LaTeX commands for improving the layout of the relax manual.

These are \ossep and \osus which will be used to format the file and directory separator character
and the underscore character respectively. They will be used in the \file{} and \directory{}
commands to add the '/\linebreak[0]' and '\_\linebreak[0]' text to allow for better line breaking.
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r22204 | bugman | 2014-02-19 11:13:22 +0100 (Wed, 19 Feb 2014) | 6 lines

Converted all LaTeX files of the manual to use the new \ossep and \osus commands.

This will result in better formatting of the manual by making the linebreaking after '/' and '_'
characters consistent and universal.
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r22205 | bugman | 2014-02-19 11:53:42 +0100 (Wed, 19 Feb 2014) | 7 lines

Created two new LaTeX commands for improving the layout of user functions in the relax manual.

These are \ufsep and \ufus which will be used to format the user function separator character and
the underscore character respectively. They are used in the \uf{} commands to add the
'.\linebreak[0]' and '\_\linebreak[0]' text to allow for improved and consistent line breaking.
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r22206 | bugman | 2014-02-19 13:59:52 +0100 (Wed, 19 Feb 2014) | 5 lines

Added the unit test infrastructure for testing the specific_analyses.relax_disp package.

This currently includes the package __all__ list unit test.
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r22207 | bugman | 2014-02-19 14:02:56 +0100 (Wed, 19 Feb 2014) | 5 lines

Updated the specific_analyses.relax_disp package __all__ list.

This was identified in the previously committed unit test.
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r22208 | bugman | 2014-02-19 14:09:31 +0100 (Wed, 19 Feb 2014) | 7 lines

Added the infrastructure for the unit tests of the specific_analyses.relax_disp.disp_data module.

This is in response to the post http://thread.gmane.org/gmane.science.nmr.relax.scm/19963/focus=5046
by Troels, and is described in my response at
http://thread.gmane.org/gmane.science.nmr.relax.scm/19963/focus=5048.
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r22209 | bugman | 2014-02-19 14:27:48 +0100 (Wed, 19 Feb 2014) | 8 lines

Created two new LaTeX commands for improving the layout of Python code in the relax manual.

These are \pysep and \pyus which will be used to format the Python module separator character and
the Python underscore character respectively. They are used in the \module{}, \pycode{}, etc.
commands to add the '.\linebreak[0]' and '\_\linebreak[0]' text to allow for improved and consistent
line breaking.
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r22210 | bugman | 2014-02-19 15:37:07 +0100 (Wed, 19 Feb 2014) | 10 lines

Complete reformatting of the base LaTeX files.

The paragraph structure has been changed so that each sentence now starts on a new line. This is
for better tracking of changes (via 'svn diff' for example), for better searchability of certain
text elements using command line tools such as 'grep', and for easier easier use of the 'sed' tool.
The change tracking is most important as it allows for finer granularity - a small change will now
only be shown as a change in one sentence rather than the whole paragraph, allowing the change to be
identified more easily. It also allows for easier commit maintenance.
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r22211 | bugman | 2014-02-19 16:43:05 +0100 (Wed, 19 Feb 2014) | 7 lines

Reformatting of all of the LaTeX code for the figures in the relax manual.

This is related to commit r22210. The aim is to have as many parts as possible on separate lines to
allow for better control of changes in the subversion repository and for improved usage of command
line tools.
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r22212 | bugman | 2014-02-19 17:09:37 +0100 (Wed, 19 Feb 2014) | 6 lines

Reformatting of all of the LaTeX code for the itemize and description lists in the relax manual.

This is to regularise the LaTeX code throughout the *.tex files of the manual. All items are now
indented for easier viewing. And leading empty lines before the lists have all been removed.
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r22213 | bugman | 2014-02-19 17:20:58 +0100 (Wed, 19 Feb 2014) | 3 lines

The docstring fetching script for the manual now formats lists as in commit r22212.
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r22214 | tlinnet | 2014-02-19 17:23:35 +0100 (Wed, 19 Feb 2014) | 3 lines

Implemented unit test for catching the correct return of loop_exp_frq_offset_point_time.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22215 | bugman | 2014-02-19 17:25:39 +0100 (Wed, 19 Feb 2014) | 3 lines

Grammar corrections - changed the 'eg.' abbreviation to 'e.g.' in a couple of places.
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r22216 | tlinnet | 2014-02-19 17:43:43 +0100 (Wed, 19 Feb 2014) | 3 lines

Modified the unit test name for testing the correct return of the relaxation time periods.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.
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r22217 | bugman | 2014-02-19 17:58:23 +0100 (Wed, 19 Feb 2014) | 6 lines

Added more to the dispersion GUI analysis tutorial.

This includes a screenshot showing the use of the 'Spin isotope' button in the GUI. Descriptions
for all five 'metadata' buttons have been added as well.
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Added more to the dispersion GUI analysis tutorial.

This includes a screenshot showing the use of the 'Spin isotope' button in the GUI. Descriptions
for all five 'metadata' buttons have been added as well.

Modified the unit test name for testing the correct return of the relaxation time periods.

Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG analysis with two fields at two delay times.