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SVN archive Commit Log


Commit Date  
[r21212] by bugman

Added all of the equations for the 'NS CPMG 2-site expanded' dispersion model to the relax manual.

These are essentially the source code modified to look good in LaTeX.

2013-10-22 13:14:38 Tree
[r21211] by bugman

Fix for the amsmath LaTeX package in the user manual.

It needs to be after the hyperref package, as hyperref clobbers a number of amsmath features.

2013-10-22 13:13:37 Tree
[r21210] by tlinnet

Modified settings script for R1rho test dataset.

2013-10-22 11:09:22 Tree
[r21209] by bugman

A 20-25% speed increase for the 'NS CPMG 2-site expanded' dispersion model.

Many repetitive mathematical operations have been eliminated and the equations have been changed to
optimise the calculation speed.

2013-10-22 10:21:54 Tree
[r21208] by tlinnet

Small corrections to r1rho settings script.

2013-10-22 08:17:40 Tree
[r21207] by bugman

Shifted the 'NS CPMG 2-site expanded' model to the top of the CPMG numerical solutions in the manual.

This is because this is the default model which should be used in most cases.

2013-10-22 06:47:56 Tree
[r21206] by tlinnet

Added test data where both the spin-lock time, the spin lock offset and the spin lock field is varied.

The data is published in:
A Folded Excited State of Ligand-Free Nuclear Coactivator Binding Domain (NCBD) Underlies Plasticity in Ligand Recognition.
Kjaergaard, M., Andersen, L., Nielsen, L.D. & Teilum, K. (2013).
Biochemistry 52, 1686–1693

with experimental conditions that
"off-resonance R1rho relaxation dispersion experiments on 15N were recorded at 18.8 T and 31 C."
"using the pulse sequence of Mulder et al. with spin-lock field strengths from 431 to 1649 Hz and offsets ranging from 0 to 10000 Hz."

2013-10-21 17:56:20 Tree
[r21205] by bugman

Fixes for 2 Relax_disp GUI tests to match the model-free fixes of r21182.

The Fake_right_click.GetPosition() method now returns a wx.Point object.

2013-10-21 14:06:20 Tree
[r21204] by bugman

Fix for a bug introduced at r21202 - the call to the calculate_r2eff() must also be made private.

2013-10-21 14:03:15 Tree
[r21203] by bugman

Fix for the Mf.test_mf_auto_analysis system test on MS Windows.

The Fake_right_click.GetPosition() method now returns a valid position. This is the original
(10, 10) position.

2013-10-21 14:01:01 Tree
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