relax SVN archive

Lots of updates and fixes to the manual.

A title page has been created.
There is now a table of contents.
The chapter names have changed.
The 'Alphabetical listing of user functions' chapter has had a few intro sections added including:
'The help system' section - a copy of the help message.
'The list of functions' section - a description of the function documentation layout.

The automatic docstring to LaTeX formatting script has been updated.
The listing is now alphabetical.
The function subsections are now divided into three:
'Synopsis' subsubsection - the first line of the docstring.
'Default argument' subsubsection.
'Docstring' subsubsection - a verbatim printout of the docstring.
All quotes are now translated into the `LaTeX' format.
All non-verbatim underscores are now properly translated into LaTeX format '\_'.

A few modifications to the docstring section of the manual.

The first line of the docstring is printed as normal text.
The first 8 spaces have been stripped from the docstring lines.

Started creating the scripts to automatically add the docstrings to the program manual.

Initialisation of the LaTeX generated program manual.

Removed the old Lyx attempt at a manual.

Bug fix:

The specific model-free results reading function was setting the number of Monte Carlo simulations
to None.

Bug fix:

Fixed the specific model-free results reading function to set the simulation selection flag.

Implemented the elimination of failed Monte Carlo simulations.

Bug fix:

Removal of a bug introduced in the last commit. The bug is in the results writing function and
was because the model-free parameter simulation data structure was being tested for the value 'None'
rather than the elements of the data structure.

Bug fixes:

Removed a bug from 'generic_fns/value.py' whereby 'self.general' was being called rather than
'self.relax.general'.

Removed a bug from 'specific_fns/model_free.py' whereby the results writing function was trying to
scale order parameter values of None.