relax SVN archive

Updated all of the dispersion system tests for the spectrum.read_intensities user function changes.

The arguments heteronuc and proton have been replaced with 'dim'.

Merged revisions 20634-20635 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20634 | bugman | 2013-08-20 16:41:30 +0200 (Tue, 20 Aug 2013) | 6 lines

Changes for the spectrum.read_intensities user function dim argument.

The default is now w1, the indirect dimension in a 2D experiment. The description has also been
fixed.
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r20635 | bugman | 2013-08-20 16:47:21 +0200 (Tue, 20 Aug 2013) | 3 lines

Fixes for all of the peak intensity reading functions - the w1 and w2 dimensions were swapped.
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Fixes for all of the peak intensity reading functions - the w1 and w2 dimensions were swapped.

Changes for the spectrum.read_intensities user function dim argument.

The default is now w1, the indirect dimension in a 2D experiment. The description has also been
fixed.

The chemical shift of each spin is now taken into account for the synthetic data for the TP02 dispersion model.

The data now properly reflects the spin lock offset.

Added the TSMFK01 model equations to the relax library: lib/dispersion/tsmfk01.py

Progress sr #3071: https://gna.org/support/index.php?3071 - Implementation of Tollinger/Kay dispersion model (2001)
Following the guide at: http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax

Troels E. Linnet provided this patch. Commit by: tlinnet _aaattt_ gmail_dot_com

Signed-off-by: Edward d'Auvergne <edward@...>

Created the TSMFK01 model target function for 2-site very-slow exchange model, range of microsecond to second time scale.

Progress sr #3071: https://gna.org/support/index.php?3071 - Implementation of Tollinger/Kay dispersion model (2001)
Following the guide at: http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax

Troels E. Linnet provided this patch. Commit by: tlinnet _aaattt_ gmail_dot_com

The function is probably not correct, since there is some problems with using the end_index
to handle the unpacking of the parameters.

Signed-off-by: Edward d'Auvergne <edward@...>

Added the TSMFK01 model to the user_functions/relax_disp.py select_model user function frontend.

Progress sr #3071: https://gna.org/support/index.php?3071 - Implementation of Tollinger/Kay dispersion model (2001)
Following the guide at: http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax

Troels E. Linnet provided this patch. Commit by: tlinnet _aaattt_ gmail_dot_com

Signed-off-by: Edward d'Auvergne <edward@...>

lib/dispersion/lm63.py is copied to tsmfk01.py as part of the implementation of the TSMFK01 model equation.

Progress sr #3071: https://gna.org/support/index.php?3071 -
Implementation of Tollinger/Kay dispersion model (2001)
Following the guide at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax

Troels E. Linnet provided this patch. Commit by: tlinnet _aaattt_ gmail_dot_com

Added the new 'TSMFK01' model to the specific_analyses\relax_disp\variables.py module.

This is the Tollinger/Kay model for the 2-site very-slow exchange model for CPMG-type experiments, which cover the range of microsecond to second time scale.
Paper by M. Tollinger, N.R. Skrynnikov, F.A.A. Mulder, J.D.F. Kay and L.E. Kay (2001).

Progress sr #3071: https://gna.org/support/index.php?3071 - Implementation of Tollinger/Kay dispersion model (2001)
Following the guide at: http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax

Troels E. Linnet provided this patch. Commit by: tlinnet _aaattt_ gmail_dot_com

Signed-off-by: Edward d'Auvergne <edward@...>