relax SVN archive

Modification of the spectrum.read_intensities user function front end.

The heteronuc and proton arguments have been eliminated. Instead the new dim argument is used to
associate the data with the spins of any dimension in the peak list.

Initialized merge tracking via "svnmerge" with revisions "1-20576" from
svn+ssh://bugman@.../svn/relax/trunk

Creation of a branch for redesigning the spectrum.read_intensities user function.

Shifted code from pipe_control.spectrum to the new lib.spectrum.peak_list relax library module.

This follows from http://thread.gmane.org/gmane.science.nmr.relax.devel/3972/focus=4347.

Added py2app to the Mac OS X Framework setup instructions.

Added support for the 'current ar archive random library' file type in the Mac OS X Framework testing script.

Better support for 4-way binaries in the Mac OS X Framework detection script.

Updated the Mac Framework testing script to handled 4-way binaries (ppc74 included).

A number of updates and improvements to the document explaining how to setup a Mac OS X framework.

This Framework Python setup is used to build the binary distribution files.

Merged revisions 20536,20542,20544,20547-20550,20553,20555,20565-20566 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20536 | bugman | 2013-08-06 09:02:50 +0200 (Tue, 06 Aug 2013) | 4 lines

Python 3 fix for the lib.software.nmrpipe.read_list_intensity_seriestab() function.

The inbuilt Python filter() function does not return a list in Python 3, as previously, but rather
a filter object. Therefore a call to list() is required to properly convert the data.
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r20542 | bugman | 2013-08-06 10:23:46 +0200 (Tue, 06 Aug 2013) | 9 lines

An attempt at better handling MS Windows not releasing the file handle on time in the test suite.

The system and unit tests tearDown() method should now be resilient to the strange MS Windows
behaviour of not releasing the relax state files. The tearDown() method should now complete even
when this error occurs. A delay of 3 seconds has been added when the WindowsError occurs to give
the OS some time before attempting to delete the file again. If this fails, then the file deletion
operation is skipped.
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r20544 | bugman | 2013-08-06 10:31:54 +0200 (Tue, 06 Aug 2013) | 3 lines

Updated the minimum Python version from 2.3 to 2.5 in the user manual.
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r20547 | bugman | 2013-08-06 11:38:56 +0200 (Tue, 06 Aug 2013) | 8 lines

Better handling of temporary file and directory removal in the relax test suite.

The new test_suite.clean_up.deletion() function has been created from the recent method of the same
name. This is used by the tearDown() method of the system, unit, and GUI tests. It should prevent
rare MS Windows errors from appearing due to the OS not releasing a temporary file after a close()
call.
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r20548 | bugman | 2013-08-06 13:55:40 +0200 (Tue, 06 Aug 2013) | 6 lines

Epydoc docstring fix for the pipe_control.spectrum.read() function.

The text "Z_A{i}" causes problems when compiling the API documentation, so it has been changed to
"Z_Ai".
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r20549 | bugman | 2013-08-06 14:21:31 +0200 (Tue, 06 Aug 2013) | 6 lines

Python 3 fix for the new test_suite.clean_up module.

The exceptions Python module does not exist in Python 3, so instead the relax compat.builtins object
is being used to store the WindowsError variable of None.
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r20550 | bugman | 2013-08-06 14:48:46 +0200 (Tue, 06 Aug 2013) | 3 lines

Added a paragraph to the installation chapter of the manual about not supporting the EPD.
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r20553 | bugman | 2013-08-06 18:33:32 +0200 (Tue, 06 Aug 2013) | 3 lines

Removal of trailing whitespace in the docs/CHANGES document.
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r20555 | bugman | 2013-08-06 18:35:14 +0200 (Tue, 06 Aug 2013) | 6 lines

Backported the relax 3.0.0 changes file additions to trunk.

The command used was:
svn merge -r20553:20554 svn+ssh://bugman@.../svn/relax/tags/3.0.0 .
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r20565 | bugman | 2013-08-07 17:22:44 +0200 (Wed, 07 Aug 2013) | 3 lines

Bibtex fixes required for proper latex2html compilation.
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r20566 | bugman | 2013-08-07 17:23:47 +0200 (Wed, 07 Aug 2013) | 3 lines

The font size is no longer set for the latex2html compiled user manual.
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