relax SVN archive

Merged revisions 20247-20257,20260-20261 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20247 | bugman | 2013-06-21 17:28:04 +0200 (Fri, 21 Jun 2013) | 8 lines

Adding a test data file in NMRPipe SeriesTab format.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

A file in NMRPipe SeriesTab format is added to the test-suite for further development.
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r20248 | bugman | 2013-06-21 18:23:24 +0200 (Fri, 21 Jun 2013) | 9 lines

Test function for NMRPipe SeriesTab format implemented.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

An assertEqual test is implemented for the reading of NMRPipe SeriesTab format. The standalone call
is: relax -s Peak_lists.test_read_peak_list_NMRPipe_seriesTab
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r20249 | bugman | 2013-06-21 18:33:03 +0200 (Fri, 21 Jun 2013) | 9 lines

Adding a NMRPipe function file in the folder lib\software\nmrpipe.py.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

Initial file for: lib\software\nmrpipe.py. This file will hold the function calls handling NMRPipe
SeriesTab format.
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r20250 | bugman | 2013-06-21 19:46:58 +0200 (Fri, 21 Jun 2013) | 9 lines

Fix for commit (http://article.gmane.org/gmane.science.nmr.relax.scm/18004). The spin naming was wrong.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

The spin naming was wrong. 'spin_id' keywords should be supplied different. Ex:
spin.name(name='NE1', spin_id=':62').
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r20251 | bugman | 2013-06-21 20:01:06 +0200 (Fri, 21 Jun 2013) | 9 lines

Autodetect format implemented for NMRPipe SeriesTab format implemented.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

The file is determined a NMRPipe SeriesTab if the first two words of the first line is: REMARK
SeriesTab.
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r20252 | bugman | 2013-06-21 22:26:18 +0200 (Fri, 21 Jun 2013) | 6 lines

Update of the rotation matrix example in the intro chapter of the user manual.

The function is now in lib.geometry.rotations.euler_to_R_zyz(). The example has also been converted
to the lstlisting environment for better formatting.
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r20253 | bugman | 2013-06-21 22:48:44 +0200 (Fri, 21 Jun 2013) | 6 lines

The relax prompt strings and help system are now keywords for the relax listings package definition.

The prompt strings "relax>" and "relax|" are now recognised as keywords and are coloured blue. The
help system has been added as a normal Python keyword for highlighting.
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r20254 | bugman | 2013-06-21 23:40:55 +0200 (Fri, 21 Jun 2013) | 5 lines

Converted all relax prompt examples in the intro chapter of the manual to the lstlisting environment.

This is simply for a more colourful representation.
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r20255 | bugman | 2013-06-22 00:45:10 +0200 (Sat, 22 Jun 2013) | 6 lines

The prompt examples in the user function chapter of the manual now use the listing environment.

This is via the fetch_docstrings.py script and results in much better formatting of these
subsections.
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r20256 | bugman | 2013-06-24 12:29:40 +0200 (Mon, 24 Jun 2013) | 9 lines

Added function destination for auto-detected NMRPipe SeriesTab format.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

Auto-detected NMRPipe SeriesTab format make function calls to the file: lib\software\nmrpipe.py in
function nmrpipe.read_list_intensity_seriestab().
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r20257 | bugman | 2013-06-24 14:58:23 +0200 (Mon, 24 Jun 2013) | 8 lines

Imported the missing lib.software.nmrpipe module into pipe_control.spectrum.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

Expected modules for use in lib\software\nmrpipe.py is imported.
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r20260 | bugman | 2013-07-09 11:35:34 +0200 (Tue, 09 Jul 2013) | 6 lines

Fix for the relax GUI splash screen.

On certain systems, the GUI was failing due to the splash screen. It is now shown after the main
wxPython window has been created.
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r20261 | bugman | 2013-07-09 11:37:34 +0200 (Tue, 09 Jul 2013) | 6 lines

Fix for the new analysis wizard when running the GUI tests.

If the create_button() method is called without a function argument, the wizard is still created.
This is triggered in the relax_disp branch on certain systems.
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Fix for the new analysis wizard when running the GUI tests.

If the create_button() method is called without a function argument, the wizard is still created.
This is triggered in the relax_disp branch on certain systems.

Fix for the relax GUI splash screen.

On certain systems, the GUI was failing due to the splash screen. It is now shown after the main
wxPython window has been created.

Added a section to the FAQ about missing menu items (http://www.nmr-relax.com/faq.html).

Internal spacing fix for http://www.nmr-relax.com/faq.html.

Imported the missing lib.software.nmrpipe module into pipe_control.spectrum.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

Expected modules for use in lib\software\nmrpipe.py is imported.

Added function destination for auto-detected NMRPipe SeriesTab format.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

Auto-detected NMRPipe SeriesTab format make function calls to the file: lib\software\nmrpipe.py in
function nmrpipe.read_list_intensity_seriestab().

The prompt examples in the user function chapter of the manual now use the listing environment.

This is via the fetch_docstrings.py script and results in much better formatting of these
subsections.

Converted all relax prompt examples in the intro chapter of the manual to the lstlisting environment.

This is simply for a more colourful representation.

The relax prompt strings and help system are now keywords for the relax listings package definition.

The prompt strings "relax>" and "relax|" are now recognised as keywords and are coloured blue. The
help system has been added as a normal Python keyword for highlighting.