relax SVN archive

The relax prompt strings and help system are now keywords for the relax listings package definition.

The prompt strings "relax>" and "relax|" are now recognised as keywords and are coloured blue. The
help system has been added as a normal Python keyword for highlighting.

Update of the rotation matrix example in the intro chapter of the user manual.

The function is now in lib.geometry.rotations.euler_to_R_zyz(). The example has also been converted
to the lstlisting environment for better formatting.

Autodetect format implemented for NMRPipe SeriesTab format implemented.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

The file is determined a NMRPipe SeriesTab if the first two words of the first line is: REMARK
SeriesTab.

Fix for commit (http://article.gmane.org/gmane.science.nmr.relax.scm/18004). The spin naming was wrong.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

The spin naming was wrong. 'spin_id' keywords should be supplied different. Ex:
spin.name(name='NE1', spin_id=':62').

Adding a NMRPipe function file in the folder lib\software\nmrpipe.py.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

Initial file for: lib\software\nmrpipe.py. This file will hold the function calls handling NMRPipe
SeriesTab format.

Test function for NMRPipe SeriesTab format implemented.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

An assertEqual test is implemented for the reading of NMRPipe SeriesTab format. The standalone call
is: relax -s Peak_lists.test_read_peak_list_NMRPipe_seriesTab

Adding a test data file in NMRPipe SeriesTab format.

Progress sr #3043: (https://gna.org/support/index.php?3043) - Support for NMRPipe seriesTab format
*.ser.

A file in NMRPipe SeriesTab format is added to the test-suite for further development.

Merged revisions 20245 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r20245 | bugman | 2013-06-21 11:46:23 +0200 (Fri, 21 Jun 2013) | 9 lines

Fix for bug #20921 (https://gna.org/bugs/?20921), the GUI tests freezing in MS Windows.

The problem was that the dipolar interaction wizard in the model-free auto-analysis GUI element was
calling its user functions asynchronously. This can lead to racing conditions. The commit r80084
(http://article.gmane.org/gmane.science.nmr.relax.scm/17840) somehow randomly triggers this racing
on MS Windows systems only together with the Mf.test_mf_auto_analysis GUI test. Now all user
functions are called synchronously.
........

Fix for bug #20921 (https://gna.org/bugs/?20921), the GUI tests freezing in MS Windows.

The problem was that the dipolar interaction wizard in the model-free auto-analysis GUI element was
calling its user functions asynchronously. This can lead to racing conditions. The commit r80084
(http://article.gmane.org/gmane.science.nmr.relax.scm/17840) somehow randomly triggers this racing
on MS Windows systems only together with the Mf.test_mf_auto_analysis GUI test. Now all user
functions are called synchronously.

Completed the script UI section of the relaxation dispersion chapter of the user manual.

The sample script is now fully explained.