relax SVN archive

Improvements to the script UI section of the NOE chapter of the user manual.

The lstlisting environments now have the correct numbering to match the script at the start,
comments have been copied into the split up script elements, and a few comments improved.

Started to convert the relax user manual to use the lstlisting environment for scripts.

This is to prettify the scripts in the manual.

Added the listings package to the relax user manual LaTeX file.

This will be used to improve the formatting and look of relax scripts in the manual.

Updated the grace2images.py scripts created by the relax_disp.plot_disp_curves user function.

This was discussed in bug #20916 (https://gna.org/bugs/?20916) and the change suggested in the post
http://thread.gmane.org/gmane.science.nmr.relax.devel/3953/focus=4000.

Improved that both small and big letters for image types can be used on the command line.

Shifted from argparse to optparse in the grace2images.py scripts from relax_disp.plot_disp_curves.

This is associated with bug #20916 (https://gna.org/bugs/?20916) and the change suggested in the
post http://thread.gmane.org/gmane.science.nmr.relax.devel/3953/focus=4000.

The argparse module is only available from for Python 2.7.3 (the version with many Python 3 features
backported) and Python >= 3.2. The module has been replaced with the similar optparse module as
used by relax, and which available in all Python version supported by relax.

Fix for the setting of the execute permissions on the grace2images.py scripts.

The problem was identified in the post at
http://thread.gmane.org/gmane.science.nmr.relax.devel/3953/focus=4000 and

This is within the relax_disp.plot_disp_curves user function after the grace2images.py script has
been created. The commit matches the changes of r20213 from trunk for the Modelfree4 batch script.

Merged revisions 20215 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20215 | bugman | 2013-06-19 15:37:00 +0200 (Wed, 19 Jun 2013) | 3 lines

Fix for some fatally incorrect code committed at r20213.
........

Fix for some fatally incorrect code committed at r20213.

Merged revisions 20213 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20213 | bugman | 2013-06-19 14:49:16 +0200 (Wed, 19 Jun 2013) | 8 lines

Bug fix for the batch file permissions for executing Art Palmer's Modelfree4 program.

This was identified in the post http://thread.gmane.org/gmane.science.nmr.relax.devel/3953/focus=4000.

The file was set to be executable, but on Unix systems it would end up with the permissions
"---x------".
........

Bug fix for the batch file permissions for executing Art Palmer's Modelfree4 program.

This was identified in the post http://thread.gmane.org/gmane.science.nmr.relax.devel/3953/focus=4000.

The file was set to be executable, but on Unix systems it would end up with the permissions
"---x------".