relax SVN archive

Fix for bug #20916, (https://gna.org/bugs/?20916) - Suggestion for python script for PNG/EPS/SVG conversion of grace files.

Troels Linnet provided this patch, and was discovered during work on a Windows 7 system: telinnet
aaattt bio_dot_ku_dot _dk

This patch will provide a grace2images.py file in each folder where a call to
specific_analyses/relax_disp/disp_data.py is called.

It is called in: def plot_disp_curves(dir=None, force=None):
and call the function: lib.software.grace.script_grace2images()

The conversion script can be executed in linux and windows, if the PATH to xmgrace has been
specified. It will look in a folder for grace files of ending *.agr and by default convert to PNG.

One can also convert to EPS and SVG. Propably more options could be added, as PDF. The conversion
depends on xmgrace compilation, and so PNG conversion is for fast inspection of graphs in folder,
and EPS for further external conversion to PDF etc.

The patch, the output file, and small script to test is attached.

I miss to make the file executable in relax, so the script can be executed directly in Linux.

The Peak_lists.test_bug_20873_peak_lists system test is now skipped if the C modules are not compiled.

This test requires the presence of the C modules.

Fix for the N_state_model.test_absolute_T system test for Mac OS X.

The precision of the check needed to be decreased.

Merged revisions 20192 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r20192 | bugman | 2013-06-18 14:28:13 +0200 (Tue, 18 Jun 2013) | 7 lines

Added support for mixed RDC data types per alignment.

This is to allow, for example, one bond RDC values of the 'D' data type and two bond RDC values of
the T = J+D data type to be loaded for the same alignment ID. This is now handled in the N-state
or ensemble analysis by handling a different RDC data type per RDC value.
........

Added support for mixed RDC data types per alignment.

This is to allow, for example, one bond RDC values of the 'D' data type and two bond RDC values of
the T = J+D data type to be loaded for the same alignment ID. This is now handled in the N-state
or ensemble analysis by handling a different RDC data type per RDC value.

Updated the relax results for Flemming Hansen's truncated CPMG data for all the recent changes.

Fix for the dispersion auto-analysis - pA and pB parameters are no longer output for the IT99 model.

These are not parameters of this model.

Added support for calculating auxiliary parameter errors for the dispersion analysis.

This is via the monte_carlo.error_analysis user function. The errors for the parameter pairs
kex-tex and pA-pB for the non-model parameter are now calculated as well.

Merged revisions 20187 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r20187 | bugman | 2013-06-18 10:00:50 +0200 (Tue, 18 Jun 2013) | 17 lines

Fix for bug #20915, (https://gna.org/bugs/?20915) - Failure of Grace opening in MS Windows

Troels E. Linnet provided this patch, and was discovered during work on a Windows 7 system: telinnet
aaattt bio_dot_ku_dot_dk

This is a small fix for a wrong call to "raise RelaxMissingBinaryError(binary)", when issuing an
external call to xmgrace.

The "path_sep" would be equal = [\/], and the RE search would not find(True) the full path specified
for the xmgrace file. This is now shifted to python: os.path.isfile
http://docs.python.org/2/library/os.path.html

Another fix, is that as a standard the command "xmgrace" is provided. This will work fine through
windows cmd, but the true name for program in windows is "xmgrace.exe", and so an additional search
for +".exe" is also performed.
........

Fix for bug #20915, (https://gna.org/bugs/?20915) - Failure of Grace opening in MS Windows

Troels E. Linnet provided this patch, and was discovered during work on a Windows 7 system: telinnet
aaattt bio_dot_ku_dot_dk

This is a small fix for a wrong call to "raise RelaxMissingBinaryError(binary)", when issuing an
external call to xmgrace.

The "path_sep" would be equal = [\/], and the RE search would not find(True) the full path specified
for the xmgrace file. This is now shifted to python: os.path.isfile
http://docs.python.org/2/library/os.path.html

Another fix, is that as a standard the command "xmgrace" is provided. This will work fine through
windows cmd, but the true name for program in windows is "xmgrace.exe", and so an additional search
for +".exe" is also performed.