relax SVN archive

Created the N_state_model.test_absolute_T system test.

This is for checking the optimisation of absolute T=J+D values to find alignment tensors.

The RDC back-calculation function now supports T = J+D values.

Merged revisions 20133 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20133 | bugman | 2013-06-14 18:50:00 +0200 (Fri, 14 Jun 2013) | 5 lines

Errors are now handled correctly for the N-state model when T = J+D values are used for the RDCs.

The error is the square root of the average variance of the RDC error and J coupling error.
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Errors are now handled correctly for the N-state model when T = J+D values are used for the RDCs.

The error is the square root of the average variance of the RDC error and J coupling error.

Merged revisions 20129-20131 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20129 | bugman | 2013-06-14 18:27:46 +0200 (Fri, 14 Jun 2013) | 6 lines

Removed the absolute argument for all of the lib.alignment.rdc functions.

This should be performed at the level of the target function, as mathematical operations may be
required prior to taking the absolute value.
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r20130 | bugman | 2013-06-14 18:35:34 +0200 (Fri, 14 Jun 2013) | 6 lines

Fixes for the N-state model target functions for the lib.alignment.rdc changes.

The absolute value is now calculated within the target function rather than when back calculating
the RDCs.
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r20131 | bugman | 2013-06-14 18:37:54 +0200 (Fri, 14 Jun 2013) | 3 lines

Simple fix for an error made in r20126.
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Simple fix for an error made in r20126.

Fixes for the N-state model target functions for the lib.alignment.rdc changes.

The absolute value is now calculated within the target function rather than when back calculating
the RDCs.

Removed the absolute argument for all of the lib.alignment.rdc functions.

This should be performed at the level of the target function, as mathematical operations may be
required prior to taking the absolute value.

Merged revisions 20125-20127 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r20125 | bugman | 2013-06-14 18:05:28 +0200 (Fri, 14 Jun 2013) | 3 lines

Added the j_coupling module to the pipe_control __all__ list.
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r20126 | bugman | 2013-06-14 18:07:44 +0200 (Fri, 14 Jun 2013) | 5 lines

Fix for the pipe_control.rdc.q_factors() for T = J+D type data.

The Q factor normalisation was incorrect, as the J coupling should be subtracted from T first.
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r20127 | bugman | 2013-06-14 18:12:11 +0200 (Fri, 14 Jun 2013) | 5 lines

Unit test fixes for the N-state model.

This is needed due to the recent package rearrangements.
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Unit test fixes for the N-state model.

This is needed due to the recent package rearrangements.