relax SVN archive

Variable renaming in the lib.dispersion.m61 module.

The variable names are now more suited to R1rho-type data, rather than CPMG-type data.

The dispersion disassemble_param_vector() function now handles missing spectrometer information.

The loop_frq() function replaces direct looping over cdp.spectrometer_frq_count.

Better support for missing frequency information in the specific_analyses.relax_disp.disp_data module.

This is in the return_index_from_frq() function which now returns an index of 0, and in
return_r2eff_arrays() which skips calculating the frequency information.

The return_index_from_frq() now handles missing frequency information.

This is in the specific_analyses.relax_disp.disp_data module.

Reverted r19753 and r19754 - the relax_disp.r2eff_setup user function is now useless.

The command used was:
svn merge -r19754:r19752 .

Manual editing was required to fix a number of conflicts. The user function is not necessary as the
errors are now directly calculated rather than simulated using bootstrapping.

.....
r19754 | bugman | 2013-05-28 11:41:25 +0200 (Tue, 28 May 2013) | 6 lines
Changed paths:
M /branches/relax_disp/auto_analyses/relax_disp.py

The relaxation dispersion auto-analysis now handles the Bootstrapping simulations.

The bootstrap_sim_num argument can now be passed into the auto-analysis, and the run() method then
executes the relax_disp.r2eff_setup user function.


------------------------------------------------------------------------
r19753 | bugman | 2013-05-28 11:37:19 +0200 (Tue, 28 May 2013) | 6 lines
Changed paths:
M /branches/relax_disp/specific_analyses/relax_disp/__init__.py
M /branches/relax_disp/user_functions/relax_disp.py

Created the relax_disp.r2eff_setup user function.

This is required to set the number of Bootstrapping simulations to use in the calc user function.
It replaces the hardcoded variable.
.....

The dispersion specific optimisation methods can now handle missing spectrometer information.

The find_intensity_keys() function can now handle the reference spectrum.

This function in the specific_analyses.relax_disp.disp_data module was failing if the relaxation
time period for the reference spectrum was missing. Time information shouldn't be needed for the
reference, so is no longer checked.

The relax_disp.select_model user function now operates without the spectrometer frequency being set.

The special loop_frq() function is now used as this can handle missing spectrometer frequency
information.

Added some error checking to the specific_analyses.relax_disp.disp_data.average_intensity() function.

This is for better feedback to the user in case they have not set up their data correctly.

Added the 'test.seq' file from bug report #20873 (http://gna.org/bugs/?20873).

This is from Troels E. Linnet (http://gna.org/users/tlinnet). The bug report and link to
http://thread.gmane.org/gmane.science.nmr.relax.user/1452 explains the contents.

The file will be used to construct a system test to catch the bug.