relax SVN archive

The return_index_from_frq() now handles missing frequency information.

This is in the specific_analyses.relax_disp.disp_data module.

Reverted r19753 and r19754 - the relax_disp.r2eff_setup user function is now useless.

The command used was:
svn merge -r19754:r19752 .

Manual editing was required to fix a number of conflicts. The user function is not necessary as the
errors are now directly calculated rather than simulated using bootstrapping.

.....
r19754 | bugman | 2013-05-28 11:41:25 +0200 (Tue, 28 May 2013) | 6 lines
Changed paths:
M /branches/relax_disp/auto_analyses/relax_disp.py

The relaxation dispersion auto-analysis now handles the Bootstrapping simulations.

The bootstrap_sim_num argument can now be passed into the auto-analysis, and the run() method then
executes the relax_disp.r2eff_setup user function.


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r19753 | bugman | 2013-05-28 11:37:19 +0200 (Tue, 28 May 2013) | 6 lines
Changed paths:
M /branches/relax_disp/specific_analyses/relax_disp/__init__.py
M /branches/relax_disp/user_functions/relax_disp.py

Created the relax_disp.r2eff_setup user function.

This is required to set the number of Bootstrapping simulations to use in the calc user function.
It replaces the hardcoded variable.
.....

The dispersion specific optimisation methods can now handle missing spectrometer information.

The find_intensity_keys() function can now handle the reference spectrum.

This function in the specific_analyses.relax_disp.disp_data module was failing if the relaxation
time period for the reference spectrum was missing. Time information shouldn't be needed for the
reference, so is no longer checked.

The relax_disp.select_model user function now operates without the spectrometer frequency being set.

The special loop_frq() function is now used as this can handle missing spectrometer frequency
information.

Added some error checking to the specific_analyses.relax_disp.disp_data.average_intensity() function.

This is for better feedback to the user in case they have not set up their data correctly.

Added the 'test.seq' file from bug report #20873 (http://gna.org/bugs/?20873).

This is from Troels E. Linnet (http://gna.org/users/tlinnet). The bug report and link to
http://thread.gmane.org/gmane.science.nmr.relax.user/1452 explains the contents.

The file will be used to construct a system test to catch the bug.

The reference spectra can now be set in the relax_disp.spin_lock_field user function.

By setting the field to None, the reference spectrum for a fixed relaxation time period experiment
type can now be specified. This mimics the behaviour of the relax_disp.cpmg_frq user function.

Added a reference to the synthetic on-resonance R1rho test suite data.

The first ncyc1 data point now has a relaxation time period of zero, hence it can be used as the
reference for a fixed time period experiment.

Expanded the synthetic on-resonance R1rho test suite data.

The data now consists of a full set of dispersion curves for the M61 model.