relax SVN archive

Fixes for the relax_disp branch for the spectrometer.frequency user function changes.

Updated the input files and added the output files for the CPMGFit program with Hansen's CPMG data.

This is for the data truncated to residues 70 and 71.

The relax_disp.cpmgfit_execute user function now correctly calls CPMGFit.

The -grid command line option has been added and the output for each spin is sent to a special
output file.

Changes to the CPMGFit input files due to the new spectrometer.frequency user function.

More fixes to the relax_disp branch for the changes of the spectrometer.frequency user function.

The relaxation dispersion specific code now uses the changes of the spectrometer.frequency user function.

This simplifies the handling of magnetic field strength data.

Merged revisions 19736 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19736 | bugman | 2013-05-24 17:08:02 +0200 (Fri, 24 May 2013) | 5 lines

Bug fix for the pipe_control.spectrometer.get_frequencies() function.

The units argument was incorrectly referenced.
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Bug fix for the pipe_control.spectrometer.get_frequencies() function.

The units argument was incorrectly referenced.

Removed the preview button from the file selection GUI element of the CPMGFit user functions.

These are the relax_disp.cpmgfit_execute and relax_disp.cpmgfit_input user functions.

Merged revisions 19723-19733 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19723 | bugman | 2013-05-24 09:25:27 +0200 (Fri, 24 May 2013) | 3 lines

The pipe_control.spectrometer.get_frequencies() function can now return MHz or Tesla units.
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r19724 | bugman | 2013-05-24 09:39:06 +0200 (Fri, 24 May 2013) | 5 lines

Renamed the functions of the pipe_control.spectrometer module.

The frequency() and temperature() functions are now called set_frequency() and set_temperature().
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r19725 | bugman | 2013-05-24 09:42:52 +0200 (Fri, 24 May 2013) | 5 lines

Added backwards compatibility support for the spectrometer frequency list and count.

This is needed for old relax state files.
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r19726 | bugman | 2013-05-24 11:18:23 +0200 (Fri, 24 May 2013) | 3 lines

A whitelist is now being used to limit the number of frame order GUI tests to 1.
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r19727 | bugman | 2013-05-24 11:50:00 +0200 (Fri, 24 May 2013) | 6 lines

Fix for the relax test suite on Python 3.1.

The TextTestRunner class in the unittest module is missing a few arguments present in all other
Python versions.
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r19728 | bugman | 2013-05-24 11:55:57 +0200 (Fri, 24 May 2013) | 3 lines

The fix of r19727 was extended to Python versions 2.6 and lower as well.
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r19729 | bugman | 2013-05-24 12:10:02 +0200 (Fri, 24 May 2013) | 14 lines

Shifted all frequency data handling associated with relaxation data to pipe_control.spectrometer.

This includes the deletion of the relax_data.frq user function as this replicates the behaviour of
spectrometer.frequency. A number of functions from the pipe_control.relax_data module have changed:

- frq() has been deleted as it is replaced by pipe_control.spectrometer.set_frequencies(),
- frq_checks() has been shifted to pipe_control.spectrometer.frequency_checks(),
- frq_loop() has been shifted to pipe_control.spectrometer.loop_frequencies(),
- num_frq() has been deleted as the new variable cdp.spectrometer_frq_count contains this info.

Two new functions in the pipe_control.spectrometer module have been added to remove the
functionality from pipe_control.relax_data. These are copy_frequencies() and delete_frequencies().
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r19730 | bugman | 2013-05-24 15:52:17 +0200 (Fri, 24 May 2013) | 3 lines

The molmol.macro_run user function file argument now has a description.
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r19731 | bugman | 2013-05-24 16:12:27 +0200 (Fri, 24 May 2013) | 6 lines

Huge speed up of the system tests for the loading and creation of model-free saved states.

The OMP files used for the system test have been truncated from 134 to 7 spins, changing the timing
of 6 system tests from 11-13 seconds to less than 0.5 seconds each.
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r19732 | bugman | 2013-05-24 16:17:27 +0200 (Fri, 24 May 2013) | 7 lines

All of the binary file arguments for the user functions now are file selection GUI elements.

The GUI user function wizard pages now have file selection buttons for selecting the executable to
run. These all have the preview button disabled. The results.read and state.load GUI elements also
have the preview button disabled.
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r19733 | bugman | 2013-05-24 16:35:06 +0200 (Fri, 24 May 2013) | 3 lines

The user function 'prompt' description elements as now displayed in the GUI wizard page.
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