relax SVN archive

Merged revisions 19695 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19695 | bugman | 2013-05-17 10:47:20 +0200 (Fri, 17 May 2013) | 12 lines

Fix for the package checking as part of the unit tests.

This was identified from the bug report #20820 (https://gna.org/bugs/?20820) submitted by Troels E.
Linnet (https://gna.org/users/tlinnet).

The problem was that on some systems, the full path is required for checking the presence of the
directories which are the sub-packages of the main package being checked. The result was that
checking for the package in the __all__ list was skipped.

Note that this change does not fix the bug reported.
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Fix for the package checking as part of the unit tests.

This was identified from the bug report #20820 (https://gna.org/bugs/?20820) submitted by Troels E.
Linnet (https://gna.org/users/tlinnet).

The problem was that on some systems, the full path is required for checking the presence of the
directories which are the sub-packages of the main package being checked. The result was that
checking for the package in the __all__ list was skipped.

Note that this change does not fix the bug reported.

A number of fixes to partly enable Monte Carlo simulations for the non 'R2eff' dispersion models.

Major redesign of the relaxation dispersion data model in the relax data store.

The data model now revolves around the three concepts of the spectrometer frequency, the dispersion
points, and the relaxation times. Peak intensity data is now handled through averaging using the
new specific_analyses.relax_disp.disp_data.average_intensity() function. R2eff/R1rho values are now
referenced by a key generated from the spectrometer frequency and nu_CPMG frequency or nu1 spin-lock
field strength. All of the specific_analyses.relax_disp package has been standardised around these
concepts. This simplifies all of the modules of the package and removes a large number of latent
bugs.

Merged revisions 19691 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19691 | bugman | 2013-05-15 18:19:46 +0200 (Wed, 15 May 2013) | 3 lines

Epydoc docstring fixes for the compat module.
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Epydoc docstring fixes for the compat module.

Basic fix for the _back_calc_r2eff() relaxation dispersion method.

A variable was misnamed.

Merged revisions 19688 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19688 | bugman | 2013-05-15 17:38:19 +0200 (Wed, 15 May 2013) | 8 lines

Converted all of the specific analysis modules into packages.

The model-free and steady-state NOE analyses were already packages, and this now brings all other
analyses in line with the package design of specific_analyses. The only change is that the files
specific_analyses/x.py have been shifted to specific_analyses/x/__init__.py and the __all__ package
variable added.
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Converted all of the specific analysis modules into packages.

The model-free and steady-state NOE analyses were already packages, and this now brings all other
analyses in line with the package design of specific_analyses. The only change is that the files
specific_analyses/x.py have been shifted to specific_analyses/x/__init__.py and the __all__ package
variable added.

Fix for the linear constraints setup of the 'R2eff' relaxation dispersion model.

There are no constraints, so the specific_analyses.relax_disp.parameters.linear_constraints()
function now returns A and b values of None.