relax SVN archive

Major redesign of the relaxation dispersion data model in the relax data store.

The data model now revolves around the three concepts of the spectrometer frequency, the dispersion
points, and the relaxation times. Peak intensity data is now handled through averaging using the
new specific_analyses.relax_disp.disp_data.average_intensity() function. R2eff/R1rho values are now
referenced by a key generated from the spectrometer frequency and nu_CPMG frequency or nu1 spin-lock
field strength. All of the specific_analyses.relax_disp package has been standardised around these
concepts. This simplifies all of the modules of the package and removes a large number of latent
bugs.

Merged revisions 19691 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19691 | bugman | 2013-05-15 18:19:46 +0200 (Wed, 15 May 2013) | 3 lines

Epydoc docstring fixes for the compat module.
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Epydoc docstring fixes for the compat module.

Basic fix for the _back_calc_r2eff() relaxation dispersion method.

A variable was misnamed.

Merged revisions 19688 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19688 | bugman | 2013-05-15 17:38:19 +0200 (Wed, 15 May 2013) | 8 lines

Converted all of the specific analysis modules into packages.

The model-free and steady-state NOE analyses were already packages, and this now brings all other
analyses in line with the package design of specific_analyses. The only change is that the files
specific_analyses/x.py have been shifted to specific_analyses/x/__init__.py and the __all__ package
variable added.
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Converted all of the specific analysis modules into packages.

The model-free and steady-state NOE analyses were already packages, and this now brings all other
analyses in line with the package design of specific_analyses. The only change is that the files
specific_analyses/x.py have been shifted to specific_analyses/x/__init__.py and the __all__ package
variable added.

Fix for the linear constraints setup of the 'R2eff' relaxation dispersion model.

There are no constraints, so the specific_analyses.relax_disp.parameters.linear_constraints()
function now returns A and b values of None.

Update of the specific_analyses.relax_disp package docstring.

Updated the relaxation dispersion system tests of the Hansen CPMG data for the new models.

The models are now 'LM63' and 'CR72', and the tests have been renamed to
Relax_disp.test_hansen_cpmg_data_LM63 and Relax_disp.test_hansen_cpmg_data_CR72.

Merged revisions 19683 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r19683 | bugman | 2013-05-15 11:46:59 +0200 (Wed, 15 May 2013) | 8 lines

Bug fix for an incorrect print statement in the N_state_model.test_paramag_centre_fit system test.

This is in the script, and was uncovered using WinPython by Troels E. Linnet
(http://gna.org/users/tlinnet) via the relax system tests at
http://thread.gmane.org/gmane.science.nmr.relax.devel/3863. The Python bug was detailed at
http://thread.gmane.org/gmane.science.nmr.relax.devel/3863/focus=3867.
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