relax SVN archive

Ported r11698 from the old relax_disp branch into the new branch.

The commands used were:
svn merge -r11697:11698 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses
svn merge -r11697:11698 svn+ssh://bugman@.../svn/relax/branches/relax_disp/test_suite/@r18123 test_suite

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r11698 | bugman | 2010-11-23 14:02:38 +0100 (Tue, 23 Nov 2010) | 6 lines
Changed paths:
M /branches/relax_disp/dep_check.py
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/specific_fns/relax_disp.py
M /branches/relax_disp/specific_fns/relax_fit.py
M /branches/relax_disp/test_suite/system_tests/relax_disp.py
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py
M /branches/relax_disp/test_suite/unit_tests/_prompt/test_relax_disp.py

Brought the relaxation dispersion branch into sync with the 1.3 line.

There were many design changes within the 1.3 line that required that the old relaxation dispersion
code be updated.
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Ported r9864 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r9863:9864 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r9864 | semor | 2009-11-02 21:11:33 +0100 (Mon, 02 Nov 2009) | 5 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Solved an issue created during the merge process (r9863) concerning the 'return_data_name_doc' call.

The solution is based on the code in 'specific_fns/relax_fit.py'.
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Ported r8733 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8732:8733 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8733 | semor | 2009-02-04 17:26:10 +0100 (Wed, 04 Feb 2009) | 6 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Fixed an import (as well as a few comments).

This however introduces an error concerning the 'chi2' being undefined in the C module for
relaxation dispersion...
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Ported r8724 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8723:8724 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8724 | semor | 2009-02-04 00:27:26 +0100 (Wed, 04 Feb 2009) | 9 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

A small fix to the system test.

However, is this fix the solution or is there something wrong with the reading of data (such as
'R2eff') by relax_data.read() ?

Shouldn't the data, for example 'R2eff', be available in 'cdp.mol[0].res[0].spin[0].R2eff_val[0]'
or 'cdp.mol[0].res[0].spin[0].R2eff[0]' for the 1st spin of the 1st residue in the 1st molecule ?
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Ported r8722 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8721:8722 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8722 | semor | 2009-02-03 00:10:59 +0100 (Tue, 03 Feb 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Added a missing import.
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Manually ported r8721 from the old relax_disp branch from the prompt package to the user_functions package.

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r8721 | semor | 2009-02-03 00:10:20 +0100 (Tue, 03 Feb 2009) | 5 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py

Added more to the docstring.

This is not complete yet...
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Ported r8720 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8719:8720 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8720 | semor | 2009-02-03 00:01:37 +0100 (Tue, 03 Feb 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Reordered a few functions for alphabetical reasons.
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Ported r8719 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8718:8719 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

The prompt package changes were manually ported to the user_functions package.

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r8719 | semor | 2009-02-02 23:55:37 +0100 (Mon, 02 Feb 2009) | 5 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/specific_fns/relax_disp.py

Removed the obsolete function 'relax_disp.r2eff_read()'.

R2eff values will be read directly by 'relax_data.read()' (see r8702 and r8703).
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Ported r8709 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8708:8709 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8709 | semor | 2009-02-02 05:33:52 +0100 (Mon, 02 Feb 2009) | 3 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Some fix to add my last name...
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Ported r8703 from the old relax_disp branch into the new branch.

The commands used were:
svn merge -r8702:8703 svn+ssh://bugman@.../svn/relax/branches/relax_disp/generic_fns/@r18123 pipe_control
svn merge -r8702:8703 svn+ssh://bugman@.../svn/relax/branches/relax_disp/test_suite/@r18123 test_suite

The prompt package changes were manually ported to the user_functions package.

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r8703 | semor | 2009-01-29 20:28:48 +0100 (Thu, 29 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/generic_fns/relax_data.py
M /branches/relax_disp/prompt/relax_data.py
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Updated a few dosctrings and tried to improve the system test.
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