relax SVN archive

Ported r8724 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8723:8724 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8724 | semor | 2009-02-04 00:27:26 +0100 (Wed, 04 Feb 2009) | 9 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

A small fix to the system test.

However, is this fix the solution or is there something wrong with the reading of data (such as
'R2eff') by relax_data.read() ?

Shouldn't the data, for example 'R2eff', be available in 'cdp.mol[0].res[0].spin[0].R2eff_val[0]'
or 'cdp.mol[0].res[0].spin[0].R2eff[0]' for the 1st spin of the 1st residue in the 1st molecule ?
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Ported r8722 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8721:8722 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8722 | semor | 2009-02-03 00:10:59 +0100 (Tue, 03 Feb 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Added a missing import.
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Manually ported r8721 from the old relax_disp branch from the prompt package to the user_functions package.

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r8721 | semor | 2009-02-03 00:10:20 +0100 (Tue, 03 Feb 2009) | 5 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py

Added more to the docstring.

This is not complete yet...
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Ported r8720 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8719:8720 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8720 | semor | 2009-02-03 00:01:37 +0100 (Tue, 03 Feb 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Reordered a few functions for alphabetical reasons.
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Ported r8719 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8718:8719 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

The prompt package changes were manually ported to the user_functions package.

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r8719 | semor | 2009-02-02 23:55:37 +0100 (Mon, 02 Feb 2009) | 5 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/specific_fns/relax_disp.py

Removed the obsolete function 'relax_disp.r2eff_read()'.

R2eff values will be read directly by 'relax_data.read()' (see r8702 and r8703).
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Ported r8709 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8708:8709 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8709 | semor | 2009-02-02 05:33:52 +0100 (Mon, 02 Feb 2009) | 3 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Some fix to add my last name...
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Ported r8703 from the old relax_disp branch into the new branch.

The commands used were:
svn merge -r8702:8703 svn+ssh://bugman@.../svn/relax/branches/relax_disp/generic_fns/@r18123 pipe_control
svn merge -r8702:8703 svn+ssh://bugman@.../svn/relax/branches/relax_disp/test_suite/@r18123 test_suite

The prompt package changes were manually ported to the user_functions package.

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r8703 | semor | 2009-01-29 20:28:48 +0100 (Thu, 29 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/generic_fns/relax_data.py
M /branches/relax_disp/prompt/relax_data.py
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Updated a few dosctrings and tried to improve the system test.
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Ported r8702 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8701:8702 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8702 | semor | 2009-01-29 20:18:10 +0100 (Thu, 29 Jan 2009) | 3 lines
Changed paths:
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/r2eff
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/r2eff/r2eff.out
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Started to implement the reading of 'r2eff' by relax_data.read() by first writing a system test.
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Ported r8699 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8698:8699 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8699 | semor | 2009-01-28 19:37:12 +0100 (Wed, 28 Jan 2009) | 9 lines
Changed paths:
M /branches/relax_disp/test_suite/unit_tests/_prompt/test_relax_disp.py

Fixed the unit tests.

This is as proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00132.html
(Message-id: <7f080ed10901280921t21fa4c3bpf70440d4c7a835b5@...>)

Thanks Ed !
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Manually ported r8698 from the prompt package to the user_functions package.

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r8698 | semor | 2009-01-28 17:57:19 +0100 (Wed, 28 Jan 2009) | 11 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py

Fixed a bug which prevented the manual pdf to be compiled.

The problem was caused by a ':' character in the references (after the volume number, as usual).
This was changed for a '.' character.

Equations were fine..!

Moreover, a better formatting was done by adding ':' characters after the word 'are' before
enumerations.
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