relax SVN archive

Ported r8719 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8718:8719 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

The prompt package changes were manually ported to the user_functions package.

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r8719 | semor | 2009-02-02 23:55:37 +0100 (Mon, 02 Feb 2009) | 5 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/specific_fns/relax_disp.py

Removed the obsolete function 'relax_disp.r2eff_read()'.

R2eff values will be read directly by 'relax_data.read()' (see r8702 and r8703).
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Ported r8709 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8708:8709 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8709 | semor | 2009-02-02 05:33:52 +0100 (Mon, 02 Feb 2009) | 3 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Some fix to add my last name...
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Ported r8703 from the old relax_disp branch into the new branch.

The commands used were:
svn merge -r8702:8703 svn+ssh://bugman@.../svn/relax/branches/relax_disp/generic_fns/@r18123 pipe_control
svn merge -r8702:8703 svn+ssh://bugman@.../svn/relax/branches/relax_disp/test_suite/@r18123 test_suite

The prompt package changes were manually ported to the user_functions package.

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r8703 | semor | 2009-01-29 20:28:48 +0100 (Thu, 29 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/generic_fns/relax_data.py
M /branches/relax_disp/prompt/relax_data.py
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Updated a few dosctrings and tried to improve the system test.
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Ported r8702 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8701:8702 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8702 | semor | 2009-01-29 20:18:10 +0100 (Thu, 29 Jan 2009) | 3 lines
Changed paths:
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/r2eff
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/r2eff/r2eff.out
M /branches/relax_disp/test_suite/system_tests/relax_disp.py

Started to implement the reading of 'r2eff' by relax_data.read() by first writing a system test.
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Ported r8699 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8698:8699 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8699 | semor | 2009-01-28 19:37:12 +0100 (Wed, 28 Jan 2009) | 9 lines
Changed paths:
M /branches/relax_disp/test_suite/unit_tests/_prompt/test_relax_disp.py

Fixed the unit tests.

This is as proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00132.html
(Message-id: <7f080ed10901280921t21fa4c3bpf70440d4c7a835b5@...>)

Thanks Ed !
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Manually ported r8698 from the prompt package to the user_functions package.

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r8698 | semor | 2009-01-28 17:57:19 +0100 (Wed, 28 Jan 2009) | 11 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py

Fixed a bug which prevented the manual pdf to be compiled.

The problem was caused by a ':' character in the references (after the volume number, as usual).
This was changed for a '.' character.

Equations were fine..!

Moreover, a better formatting was done by adding ':' characters after the word 'are' before
enumerations.
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Ported r8697 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8696:8697 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8697 | semor | 2009-01-28 17:08:11 +0100 (Wed, 28 Jan 2009) | 18 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

Started to make changes for multiple field relaxation disperison analysis.

This seems necessary, so maybe we should not support single field analysis of relaxation dispersion
at all.

-> Kovrigin et al. (2006) JMagRes, 180: 93-104.

...

The changes made here are only a first draft and may not work. In particular, maybe the
spectrum.read_intensities(), relax_disp.cpmg_frq(), spectrum.replicated(),
spectrum.error_analysis(), and deselect.read() functions will need to know the magnetic field to
which the particular dataset is associated...

In fact, the different datasets should be input first and their R2eff calculated indepentantly. In
a second step, the actual relaxation dispersion curve fitting should be made with all data.
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Ported r8696 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8695:8696 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8696 | semor | 2009-01-28 15:44:32 +0100 (Wed, 28 Jan 2009) | 7 lines
Changed paths:
M /branches/relax_disp/test_suite/unit_tests/_prompt/test_relax_disp.py

Fixed a bug where the 'id' argument was not set.

This was proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00127.html
(Message-id: <7f080ed10901280059y3303254bv89c0c1293e9916c0@...>)
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Ported r8688 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8687:8688 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

The prompt package changes were manually ported to the user_functions package.

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r8688 | semor | 2009-01-27 23:24:12 +0100 (Tue, 27 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/specific_fns/relax_disp.py

Changed the default value for 'int_cpmg' to avoid an impossible mathematical situation: ln(0).
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Ported r8687 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8686:8687 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

The prompt package changes were manually ported to the user_functions package.

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r8687 | semor | 2009-01-27 23:11:53 +0100 (Tue, 27 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/specific_fns/relax_disp.py

A few fixes based on the unit tests problems.
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