relax SVN archive

Ported r8428 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8427:8428 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8428 | semor | 2009-01-13 04:13:54 +0100 (Tue, 13 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Converted the function linear_constraints() for relaxation dispersion needs.
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Ported r8426 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8425:8426 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8426 | semor | 2009-01-12 19:32:24 +0100 (Mon, 12 Jan 2009) | 10 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Started to implement a function for calculating the effective transversal relaxation rate (R2eff).

Now, the good file has been modified, contrary to what happened in r8418 (which was corrected in
r8420).

This follows a thread at:
https://mail.gna.org/public/relax-devel/2009-01/msg00067.html
(Message-id: <496B479D.3070304@...>)
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Ported r8417 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8416:8417 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8417 | semor | 2009-01-12 14:42:33 +0100 (Mon, 12 Jan 2009) | 5 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Made a few corrections proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00066.html
(Message-id: <7f080ed10901120532h736892bbmd03483b4decadf39@...>)
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Ported r8415 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8414:8415 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8415 | semor | 2009-01-12 14:27:11 +0100 (Mon, 12 Jan 2009) | 7 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Added tests, print statements and other code to the relaxation dispersion specific functions.

Tests were proosed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00065.html
(Message-id: <7f080ed10901120107t4f1cd53ew51f498a45a38eade@...>)
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Ported r8399 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8398:8399 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8399 | semor | 2009-01-12 01:54:56 +0100 (Mon, 12 Jan 2009) | 5 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Introduced a relaxError when chosing 'r1rho' as experiment type as this won't be implemented now.

Efforts will be concentrated on the CPMG code first, then on the R1rho code.
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Ported r8398 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8397:8398 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8398 | semor | 2009-01-12 01:53:01 +0100 (Mon, 12 Jan 2009) | 5 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

Rearranged commands in the scripts.

The experiment type and exchange regime will have to be input before the cpmg pulse train delay T.
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Ported r8397 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8396:8397 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8397 | semor | 2009-01-11 22:38:34 +0100 (Sun, 11 Jan 2009) | 7 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Corrected capitalisation issues for param names.

These were spotted by Ed in a thread starting at:
https://mail.gna.org/public/relax-devel/2009-01/msg00059.html
(Message-id: <7f080ed10901111240o15a93096w59b397684b010634@...>)
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Ported r8396 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8395:8396 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8396 | semor | 2009-01-11 21:29:53 +0100 (Sun, 11 Jan 2009) | 10 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Changed the object names so they are lower case as they should be, based on the rest of the code.

Made the equivalent change in the function assemble_param_vector() to allow the system-test to go
further..

This was spotted by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00058.html
(Message-id: <7f080ed10901111041n65ecd976ie058ed0500d47746@...>)
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Ported r8395 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8394:8395 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8395 | semor | 2009-01-11 21:21:13 +0100 (Sun, 11 Jan 2009) | 6 lines
Changed paths:
D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz/fake_sequence.in
D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz/readme
D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/readme
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/unresolved
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/fake_sequence.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz
/fake_sequence.in:8394)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/readme (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz/readme:83
94)
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

Added an 'unresolved' file to the 800 MHz data and moved (and modified) some files (sequence and
readme) so there is only one copy for the 500 and 800 MHz data.

This prevents duplicated files.
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Ported r8394 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8393:8394 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8394 | semor | 2009-01-11 21:09:38 +0100 (Sun, 11 Jan 2009) | 9 lines
Changed paths:
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/500_MHz (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a:8389)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b:8390)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/1000.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/100
0.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/1000.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_
1-b/1000.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/1
33.33.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in.bis (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1
-b/133.33.in.bis:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/da
taset_1-b/133.33.in.bis_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/133.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase
t_1-b/133.33.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/200.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/200.
in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/200.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1
-b/200.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/266.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/2
66.67.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/266.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase
t_1-b/266.67.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/333.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/3
33.33.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/333.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase
t_1-b/333.33.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/400.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/400.
in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/400.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1
-b/400.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/466.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/4
66.67.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/466.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase
t_1-b/466.67.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/5
33.33.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in.bis (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1
-b/533.33.in.bis:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/da
taset_1-b/533.33.in.bis_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/533.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/datase
t_1-b/533.33.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/600.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/600.
in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/600.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1
-b/600.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/66.667.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/66.667.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/66.667.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/66.667.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/666.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/666.67.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/666.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/666.67.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/733.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/733.33.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/733.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/733.33.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/800.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/800.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/800.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/800.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/866.67.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/866.67.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/866.67.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/866.67.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in.bis (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in.bis:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in.bis_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in.bis_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/933.33.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/933.33.in_sparky:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/reference.in (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/reference.in:8391)
A /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/Hansen/800_MHz/reference.in_sparky (from /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b/reference.in_sparky:8391)
D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-a
D /branches/relax_disp/test_suite/shared_data/curve_fitting_disp/dataset_1-b
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py

Renamed the directories containing the sample datasets provided by Flemming Hansen.

The names are now more obvious as to their content...

This was proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00056.html
(Message-id: <7f080ed10901111037k75882ca5p6d29a4c3697659c3@...>)
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