relax SVN archive

Ported r8342 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8341:8342 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8342 | semor | 2009-01-08 19:44:36 +0100 (Thu, 08 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Made a few changes so the cpmg_delayT() function now works.
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Ported r8340 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8339:8340 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8340 | semor | 2009-01-08 18:07:15 +0100 (Thu, 08 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

Fixed a few typos.
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Ported r8339 from the old relax_disp branch into the new branch.

The commands used were:
svn merge -r8338:8339 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .
svn merge -r8338:8339 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

The code for the user_functions package was manually ported over.

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r8339 | semor | 2009-01-08 17:48:13 +0100 (Thu, 08 Jan 2009) | 8 lines
Changed paths:
M /branches/relax_disp/prompt/relax_disp.py
M /branches/relax_disp/specific_fns/relax_disp.py
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

Added the user function cpmg_delayT() which allows setting the CPMG constant time delay T used for
the analysed dataset.

This follows a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00027.html
(Message-id: <496583C7.6050607@...>)
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Ported r8338 from the old relax_disp branch into the new branch (partly manually).

The changes not made by hand come from the command:
svn merge -r8337:8338 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

All changes not in the specific_analyses package were hand edited.

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r8338 | semor | 2009-01-08 17:17:32 +0100 (Thu, 08 Jan 2009) | 7 lines
Changed paths:
M /branches/relax_disp/generic_fns/pipes.py
M /branches/relax_disp/prompt/__init__.py
M /branches/relax_disp/prompt/interpreter.py
M /branches/relax_disp/prompt/pipe.py
M /branches/relax_disp/specific_fns/__init__.py
M /branches/relax_disp/specific_fns/relax_disp.py
M /branches/relax_disp/specific_fns/setup.py

Fixed many formatting errors and made the 'relax_disp' code accessible (pipes, interpreter, etc).

These changes also include a coming back to using the C code 'math_fns/relax_fit.py' since there is
still no such code associated to relaxation dispersion. This will allow workingin the code without
relax crashing and complaining about the lack of a C module name 'relax_disp.py'.
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Ported r8337 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8336:8337 svn+ssh://bugman@.../svn/relax/branches/relax_disp@r18123 .

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r8337 | semor | 2009-01-08 16:51:44 +0100 (Thu, 08 Jan 2009) | 6 lines
Changed paths:
M /branches/relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_fast.py

Included the setting of the spectrometer frequency and uncommented a few lines of code.

Of course, this won't work until the sample data has been introduced and the right namesfor the
different files be input in the system test script...
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Ported r8335 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8334:8335 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8335 | semor | 2009-01-08 16:19:09 +0100 (Thu, 08 Jan 2009) | 9 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Changed the index name and description.

This is as proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00029.html
(Message-id: <7f080ed10901080144u541e6ed5ve52d2d233f8d7cf7@...>)

The description might change later to be more appropriate when the code is more mature...
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Ported r8331 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8330:8331 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8331 | semor | 2009-01-08 00:48:34 +0100 (Thu, 08 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Changed 'relax_time' instances to 'cpmg_frq'.
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Ported r8330 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8329:8330 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8330 | semor | 2009-01-08 00:38:30 +0100 (Thu, 08 Jan 2009) | 3 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Changed all instances of 'relax_times' to 'cpmg_frqs' and made other small changes.
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Ported r8329 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8328:8329 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8329 | semor | 2009-01-08 00:23:28 +0100 (Thu, 08 Jan 2009) | 5 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Renamed 'cdp.frq' to 'cdp.cpmg_frqs' so it is not confusing with the spectrometer frequency.

Indeed, 'cdp.cpmg_frqs' points to the CPMG pulse train frequency (nu_cpmg).
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Ported r8328 from the old relax_disp branch into the new branch.

The command used was:
svn merge -r8327:8328 svn+ssh://bugman@.../svn/relax/branches/relax_disp/specific_fns/@r18123 specific_analyses

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r8328 | semor | 2009-01-08 00:16:20 +0100 (Thu, 08 Jan 2009) | 5 lines
Changed paths:
M /branches/relax_disp/specific_fns/relax_disp.py

Moved the relax_time() function to cpmg_frq() and made other small changes.

Still much (!) work is needed for this code to be complete.
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