relax SVN archive

The rotor frame order models now have the rotor PDB object created for them in _pdb_geometric_rep().

This is used by the frame_order.pdb_model user function.

relax version 2.2.5.

This is a minor feature release with improvements for the model-free auto-analysis with new Rex value files created which are scaled to the spectrometer frequencies and with some minor improvements to the structural API.

Merged revisions 18931 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18931 | bugman | 2013-03-21 16:20:51 +0100 (Thu, 21 Mar 2013) | 6 lines

The lib.structure.rotor.rotor_pdb() function can now handle structural models.

The model number argument has been added to allow the rotor structure to be added to a single model,
or to all models if not supplied.
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The lib.structure.rotor.rotor_pdb() function can now handle structural models.

The model number argument has been added to allow the rotor structure to be added to a single model,
or to all models if not supplied.

Merged revisions 18927-18929 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18927 | bugman | 2013-03-20 22:36:14 +0100 (Wed, 20 Mar 2013) | 5 lines

Converted links in all docstrings to use the Epydoc hyperlink notation.

This will allow links to be clickable for the API documentation (http://www.nmr-relax.com/api/).
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r18928 | bugman | 2013-03-20 22:55:12 +0100 (Wed, 20 Mar 2013) | 5 lines

Added Epydoc hyperlink markup for the bug tracker in the system test docstring where missing.

This is for a better API documentation (http://www.nmr-relax.com/api/).
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r18929 | bugman | 2013-03-21 15:10:11 +0100 (Thu, 21 Mar 2013) | 7 lines

The lib.structure.rotor.rotor_pdb() rotor_angle argument should now be in radians.

This does not affect the structure.create_rotor_pdb() user function as the
generic_fns.structure.geometric.create_rotor_pdb() function converts the value to radians prior to
calling the rotor_pdb() function.
........

The lib.structure.rotor.rotor_pdb() rotor_angle argument should now be in radians.

This does not affect the structure.create_rotor_pdb() user function as the
generic_fns.structure.geometric.create_rotor_pdb() function converts the value to radians prior to
calling the rotor_pdb() function.

Added Epydoc hyperlink markup for the bug tracker in the system test docstring where missing.

This is for a better API documentation (http://www.nmr-relax.com/api/).

Converted links in all docstrings to use the Epydoc hyperlink notation.

This will allow links to be clickable for the API documentation (http://www.nmr-relax.com/api/).

Merged revisions 18923-18925 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18923 | bugman | 2013-03-20 17:06:40 +0100 (Wed, 20 Mar 2013) | 5 lines

Split the generic_fns.structure.geometric.create_rotor_pdb() function.

The non-relax specific code has been shifted into the rotor_pdb() function.
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r18924 | bugman | 2013-03-20 17:09:55 +0100 (Wed, 20 Mar 2013) | 3 lines

Initialised the lib.structure package - this is currently empty.
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r18925 | bugman | 2013-03-20 17:24:22 +0100 (Wed, 20 Mar 2013) | 8 lines

Shifted the rotor creation components from generic_fns.structure.geometric to lib.structure.rotor.

The create_rotor_pdb() function remains in place as this is the user function backend which checks
for data pipes and updates the status object, but the rotor_pdb() and create_rotor_propellers()
functions have been moved into the relax library. The create_rotor_propellers() function has been
renamed to lib.structure.rotor.rotor_propellers().
........

Shifted the rotor creation components from generic_fns.structure.geometric to lib.structure.rotor.

The create_rotor_pdb() function remains in place as this is the user function backend which checks
for data pipes and updates the status object, but the rotor_pdb() and create_rotor_propellers()
functions have been moved into the relax library. The create_rotor_propellers() function has been
renamed to lib.structure.rotor.rotor_propellers().