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SVN archive Commit Log


Commit Date  
[r18859] by bugman

The printouts from the structure.read_pdb user function are now different with the merge flag set.

The text now says that the molecules are being merged rather than added.

2013-03-18 14:31:04 Tree
[r18858] by bugman

Bug fix for the structural data consistency test in the pack_structs() structural API method.

The index was not correct causing failures in certain rare cases.

2013-03-18 14:27:56 Tree
[r18857] by bugman

Fixes for the test suite for the changes to the Ap4Aase PDB file atom numbering at r18855.

2013-03-18 14:18:36 Tree
[r18856] by bugman

Implemented the merging of structural objects.

This allows the merge flag of the structure.read_pdb user function to work.

2013-03-18 13:48:59 Tree
[r18855] by bugman

Fixes for all the Ap4Aase truncated PDB files.

The atom numbers are now sequential, as defined by the PDB standard.

2013-03-18 13:48:13 Tree
[r18854] by bugman

Fix for a copy and paste error in the Structure.test_read_merge system test.

2013-03-18 13:25:05 Tree
[r18853] by bugman

Replaced many instances of the tab character '\t' with 4 spaces.

2013-03-18 13:10:36 Tree
[r18852] by bugman

The MolList.add_item() structural API method now returns the added molecule container.

This is used by the pack_structs() method to alias the molecule, and will be required when structure
merging is implemented.

2013-03-18 12:56:17 Tree
[r18851] by bugman

The merge flag for the structure.read_pdb user function is now propaged to the pack_structs() method.

This structure API method calls the ModelList.merge_item() method which is yet to be implemented.

2013-03-18 12:51:56 Tree
[r18850] by bugman

Docstring fix for the structure.read_pdb user function backend.

2013-03-18 12:42:16 Tree
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