relax SVN archive

Merged revisions 18812 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18812 | bugman | 2013-03-13 15:21:07 +0100 (Wed, 13 Mar 2013) | 10 lines

Fix for bug #20613 (https://gna.org/bugs/?20613), the failure of the diffusion tensor PDB creation.

This was reported by Angelo Miguel Figueiredo <am dott figueiredo att fct dot unl dot pt>.

The problem was that the diffusion tensor PDB representation structure.create_diff_tensor_pdb user
function was being called even when the local tm global model was selected. This naturally failed
as there is no global diffusion tensor. Now this user function is avoided for the local tm global
model.
........

Fix for bug #20613 (https://gna.org/bugs/?20613), the failure of the diffusion tensor PDB creation.

This was reported by Angelo Miguel Figueiredo <am dott figueiredo att fct dot unl dot pt>.

The problem was that the diffusion tensor PDB representation structure.create_diff_tensor_pdb user
function was being called even when the local tm global model was selected. This naturally failed
as there is no global diffusion tensor. Now this user function is avoided for the local tm global
model.

Merged revisions 18810 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18810 | bugman | 2013-03-13 15:13:33 +0100 (Wed, 13 Mar 2013) | 14 lines

Created the Mf.test_bug_20613_auto_mf_diff_tensor_pdb system test to catch bug #20613.

This was reported by Angelo Miguel Figueiredo <am dott figueiredo att fct dot unl dot pt> at
https://gna.org/bugs/?20613.

This test is a direct copy of the Mf.test_bug_20563_missing_ri_error system test. The only change
is that the local tm global model results file (in the local_tm/aic/ directory) has been modified.
This results were read into relax, the file test_suite/shared_data/structures/Ap4Aase_res1-12.pdb
loaded into the data pipe, and the results saved again.

This triggers the bug as the problem is the presence of structural data with the local tm global
model being selected in the auto-analysis.
........

Created the Mf.test_bug_20613_auto_mf_diff_tensor_pdb system test to catch bug #20613.

This was reported by Angelo Miguel Figueiredo <am dott figueiredo att fct dot unl dot pt> at
https://gna.org/bugs/?20613.

This test is a direct copy of the Mf.test_bug_20563_missing_ri_error system test. The only change
is that the local tm global model results file (in the local_tm/aic/ directory) has been modified.
This results were read into relax, the file test_suite/shared_data/structures/Ap4Aase_res1-12.pdb
loaded into the data pipe, and the results saved again.

This triggers the bug as the problem is the presence of structural data with the local tm global
model being selected in the auto-analysis.

Merged revisions 18808 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18808 | bugman | 2013-03-12 23:46:49 +0100 (Tue, 12 Mar 2013) | 5 lines

Modified the script for running the relax test-suite on multiple Python versions.

The pre-2.2 Python versions are now commented out as well as the abortive Python 3.0.
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Modified the script for running the relax test-suite on multiple Python versions.

The pre-2.2 Python versions are now commented out as well as the abortive Python 3.0.

Merged revisions 18806 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18806 | bugman | 2013-03-12 18:45:20 +0100 (Tue, 12 Mar 2013) | 5 lines

Bug fix for the external Scientific Python Geometry package.

This is a strange Python 3 issue only triggered when the epydoc Python package is installed.
........

Bug fix for the external Scientific Python Geometry package.

This is a strange Python 3 issue only triggered when the epydoc Python package is installed.

Python 3 fixes for the Sobol external library test scripts - absolute paths are now used for import.

Python 3 updates for the frame_order_testing branch.

The command used was:
2to3 -j 4 -w \
-f buffer \
-f idioms \
-f set_literal \
-f ws_comma \
-x except \
-x import \
-x imports \
-x long \
-x numliterals \
-x xrange \
.