relax SVN archive

Added a unit test for the lib.geometry package __all__ list.

Blacklisted a number of files in the maths_fns package for the package __all__ list unit test.

Improved the base class unit test for the package __all__ list.

Subpackages are now also checked.

Added the package checking unit tests for the lib package.

Created the lib.geometry.lines module for performing geometric operations with lines.

This has one stub of a function lib.geometry.lines.closest_point() which will be used to find the
closest point on a line to a given point.

Created the lib.text package for text manipulation.

The first module will be the text formatting of tables.

Merged revisions 18657,18659-18660 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18657 | bugman | 2013-03-06 11:11:05 +0100 (Wed, 06 Mar 2013) | 8 lines

Removed the prune parameter from the backend of the monte_carlo.error_analysis user function.

This was a dangerous parameter used to mimic the 'Trim' parameter from the Modelfree4 program. The
result is bad statistics. The probable reason for the 'Trim' parameter was the failure of
model-free models in the simulations, but this issue was solved using model elimination (see
http://www.nmr-relax.com/refs.html#dAuvergneGooley06).
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r18659 | bugman | 2013-03-06 17:33:01 +0100 (Wed, 06 Mar 2013) | 5 lines

Created the Structure.test_read_xyz_strychnine system test to demonstrate a bug in the XYZ parser.

This is for the reading of XYZ structure files.
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r18660 | bugman | 2013-03-06 17:37:24 +0100 (Wed, 06 Mar 2013) | 6 lines

Bug fix for the XYZ 3D structure file reader.

The atom name is now correctly set up for each atom in the file. The element type setting has also
been simplified.
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Bug fix for the XYZ 3D structure file reader.

The atom name is now correctly set up for each atom in the file. The element type setting has also
been simplified.

Created the Structure.test_read_xyz_strychnine system test to demonstrate a bug in the XYZ parser.

This is for the reading of XYZ structure files.

Added the optimisation log for the displacement frame order test suite data.