relax SVN archive

Fix for the internal menu at http://www.nmr-relax.com/links.html.

Fixes for the align_tensor.matrix_angles user function for the frame order testing branch.

The user function now falls back to the tensor index if the name is not present.

Merged revisions 18550-18551 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18550 | bugman | 2013-02-20 20:12:39 +0100 (Wed, 20 Feb 2013) | 3 lines

Created a unit test for the generic_fns.structure.pdb_write.model() function.
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r18551 | bugman | 2013-02-20 20:16:11 +0100 (Wed, 20 Feb 2013) | 5 lines

Fix for the generic_fns.structure.pdb_write.model() function.

The correct amount of whitespace is now added to the end of the record.
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Fix for the generic_fns.structure.pdb_write.model() function.

The correct amount of whitespace is now added to the end of the record.

Created a unit test for the generic_fns.structure.pdb_write.model() function.

Merged revisions 18546 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18546 | bugman | 2013-02-20 18:58:14 +0100 (Wed, 20 Feb 2013) | 5 lines

Epydoc docstring formatting for the generic_fns.structure.pdb_write modules.

These large changes improve the API documentation at http://www.nmr-relax.com/api/.
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Fix for the frame order specific _target_fn_setup() method.

The problem was recently introduced at r18436. Now the checks for missing PCS and RDC data should
function correctly.

Fix for the structure.rmsd user function for the frame order testing branch.

The code needs to be slightly modified to work with this branch.

Epydoc docstring formatting for the generic_fns.structure.pdb_write modules.

These large changes improve the API documentation at http://www.nmr-relax.com/api/.

Merged revisions 18542-18544 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18542 | bugman | 2013-02-20 17:05:25 +0100 (Wed, 20 Feb 2013) | 6 lines

The diffusion tensor PDB files are now conform better to the PDB standard.

The HET records are now correct, only capitalised text is present in the files, and trailing
whitespace to character 80 has been added.
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r18543 | bugman | 2013-02-20 17:17:53 +0100 (Wed, 20 Feb 2013) | 5 lines

Fix for the generic_fns.structure.pdb_write.ter() function.

Whitespace to character 80 is now being added to the TER PDB records.
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r18544 | bugman | 2013-02-20 17:20:17 +0100 (Wed, 20 Feb 2013) | 6 lines

Fix for the creation of the FORMUL PDB records by the internal structural object.

The component number is now set to the index of the hetrogen plus one. This number should have been
a sequential number starting at 1 and is not related to the residue number in any way.
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